SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'TRH'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JU6_A_LYAA317_1
(THYMIDYLATE SYNTHASE)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 11 PHE A 135
ASP A 110
LEU A 108
PHE A 113
ALA A   9
None
TRH  A 500 (-2.9A)
TRH  A 500 ( 4.2A)
None
None
1.39A 1ju6A-5ifyA:
undetectable
1ju6A-5ifyA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1L5R_A_RBFA859_1
(GLYCOGEN
PHOSPHORYLASE, LIVER
FORM)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 11 PHE A 135
LEU A 216
TYR A 170
GLY A 174
PHE A 150
None
None
None
TRH  A 500 ( 4.0A)
None
1.34A 1l5rA-5ifyA:
undetectable
1l5rA-5ifyA:
17.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NBI_A_SAMA293_0
(GLYCINE
N-METHYLTRANSFERASE)
2x0f WSAF
(Geobacillus
stearothermophil
us)
5 / 12 ILE A 280
GLY A 248
VAL A 282
ALA A 256
GLY A 318
None
None
TRH  A 416 ( 4.4A)
None
None
1.09A 1nbiA-2x0fA:
undetectable
1nbiA-2x0fA:
20.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NBI_B_SAMB1293_0
(GLYCINE
N-METHYLTRANSFERASE)
2x0f WSAF
(Geobacillus
stearothermophil
us)
5 / 12 ILE A 280
GLY A 248
VAL A 282
ALA A 256
GLY A 318
None
None
TRH  A 416 ( 4.4A)
None
None
1.09A 1nbiB-2x0fA:
undetectable
1nbiB-2x0fA:
20.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A3C_A_PNXA1435_1
(CHITINASE)
2x0f WSAF
(Geobacillus
stearothermophil
us)
4 / 6 TYR A 308
GLY A  63
PHE A  62
SER A  66
TRH  A 416 (-3.6A)
TRH  A 416 (-3.7A)
None
TRH  A 416 (-3.6A)
1.10A 2a3cA-2x0fA:
undetectable
2a3cA-2x0fA:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A3C_B_PNXB2434_1
(CHITINASE)
2x0f WSAF
(Geobacillus
stearothermophil
us)
4 / 6 TYR A 308
GLY A  63
PHE A  62
SER A  66
TRH  A 416 (-3.6A)
TRH  A 416 (-3.7A)
None
TRH  A 416 (-3.6A)
1.05A 2a3cB-2x0fA:
undetectable
2a3cB-2x0fA:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2F16_H_BO2H1400_1
(PROTEASOME COMPONENT
PUP1
PROTEASOME COMPONENT
PUP3)
5wxi EARP
(Neisseria
meningitidis)
5 / 11 GLN A 231
ALA A 229
ALA A 211
GLY A 212
THR A 213
None
None
TRH  A 401 (-3.6A)
SO4  A 408 (-3.4A)
SO4  A 408 (-3.3A)
0.97A 2f16H-5wxiA:
undetectable
2f16I-5wxiA:
undetectable
2f16H-5wxiA:
18.13
2f16I-5wxiA:
16.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2F16_V_BO2V1401_1
(PROTEASOME COMPONENT
PUP1
PROTEASOME COMPONENT
PUP3)
5wxi EARP
(Neisseria
meningitidis)
5 / 11 GLN A 231
ALA A 229
ALA A 211
GLY A 212
THR A 213
None
None
TRH  A 401 (-3.6A)
SO4  A 408 (-3.4A)
SO4  A 408 (-3.3A)
0.97A 2f16V-5wxiA:
undetectable
2f16W-5wxiA:
undetectable
2f16V-5wxiA:
18.13
2f16W-5wxiA:
16.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2F78_A_BEZA1003_0
(HTH-TYPE
TRANSCRIPTIONAL
REGULATOR BENM)
2ixc DTDP-4-DEHYDRORHAMNO
SE 3,5-EPIMERASE
RMLC

(Mycobacterium
tuberculosis)
4 / 7 VAL A 130
SER A  51
ARG A  59
HIS A  62
None
TRH  A1199 ( 4.8A)
TRH  A1199 (-4.0A)
TRH  A1199 (-3.5A)
0.95A 2f78A-2ixcA:
undetectable
2f78A-2ixcA:
24.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2F8D_A_BEZA1001_0
(HTH-TYPE
TRANSCRIPTIONAL
REGULATOR BENM)
2ixc DTDP-4-DEHYDRORHAMNO
SE 3,5-EPIMERASE
RMLC

(Mycobacterium
tuberculosis)
4 / 6 VAL A 130
SER A  51
ARG A  59
HIS A  62
None
TRH  A1199 ( 4.8A)
TRH  A1199 (-4.0A)
TRH  A1199 (-3.5A)
0.85A 2f8dA-2ixcA:
undetectable
2f8dA-2ixcA:
24.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FL5_F_RBFF204_1
(IMMUNOGLOBULIN IGG1
LAMBDA LIGHT CHAIN
IMMUNOGLOBULIN IGG1
HEAVY CHAIN)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
4 / 8 ASN A 203
GLU A 161
VAL A 134
TYR A 176
None
TRH  A 500 (-2.8A)
None
None
1.17A 2fl5E-5ifyA:
undetectable
2fl5F-5ifyA:
undetectable
2fl5E-5ifyA:
22.01
2fl5F-5ifyA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HZQ_A_STRA300_1
(APOLIPOPROTEIN D)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
4 / 7 THR A 226
TYR A 176
PHE A 113
LEU A  88
None
None
None
TRH  A 500 (-4.6A)
1.00A 2hzqA-5ifyA:
undetectable
2hzqA-5ifyA:
18.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Q7L_A_TESA155_1
(ANDROGEN RECEPTOR)
5wxi EARP
(Neisseria
meningitidis)
5 / 12 GLY A  22
GLN A 252
VAL A  30
MET A 142
THR A  90
TRH  A 401 ( 4.0A)
TRH  A 401 ( 4.0A)
None
None
None
1.33A 2q7lA-5wxiA:
undetectable
2q7lA-5wxiA:
14.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2UYQ_A_SAMA1311_0
(HYPOTHETICAL PROTEIN
ML2640)
2ixl DTDP-4-DEHYDRORHAMNO
SE 3,5-EPIMERASE

(Streptococcus
suis)
4 / 7 GLY A 128
ASP A  98
LEU A  99
ARG A 100
TRH  A1198 ( 4.1A)
None
None
None
0.63A 2uyqA-2ixlA:
undetectable
2uyqA-2ixlA:
22.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AIA_A_SAMA206_0
(UPF0217 PROTEIN
MJ1640)
2ixl DTDP-4-DEHYDRORHAMNO
SE 3,5-EPIMERASE

(Streptococcus
suis)
4 / 6 LEU A  93
GLY A 128
LEU A 132
SER A 133
None
TRH  A1198 ( 4.1A)
None
None
0.89A 3aiaA-2ixlA:
undetectable
3aiaA-2ixlA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AOC_C_ERYC3402_0
(ACRIFLAVINE
RESISTANCE PROTEIN B)
5nv8 EF-P ARGININE 32
RHAMNOSYL-TRANSFERAS
E

(Pseudomonas
putida)
5 / 12 SER A 275
ILE A  18
PHE A 252
LEU A 190
GLU A 194
TRH  A 401 (-2.9A)
None
TRH  A 401 (-3.6A)
None
None
1.50A 3aocC-5nv8A:
undetectable
3aocC-5nv8A:
16.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IJD_B_C2FB314_1
(UNCHARACTERIZED
PROTEIN)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
3 / 3 THR A 200
LYS A  25
GLU A 198
TRH  A 500 (-4.5A)
TRH  A 500 ( 4.0A)
None
0.62A 3ijdB-5ifyA:
undetectable
3ijdB-5ifyA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NT1_A_NPSA5_1
(PROSTAGLANDIN-ENDOPE
ROXIDE SYNTHASE 2)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 12 LEU A  27
LEU A  67
GLY A  10
ALA A   9
SER A  55
None
None
TRH  A 500 (-2.9A)
None
None
0.98A 3nt1A-5ifyA:
undetectable
3nt1A-5ifyA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NT1_B_NPSB4_1
(PROSTAGLANDIN-ENDOPE
ROXIDE SYNTHASE 2)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 12 LEU A  27
LEU A  67
GLY A  10
ALA A   9
SER A  55
None
None
TRH  A 500 (-2.9A)
None
None
0.98A 3nt1B-5ifyA:
undetectable
3nt1B-5ifyA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3PGH_D_FLPD701_1
(CYCLOOXYGENASE-2)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 12 LEU A  27
LEU A  67
GLY A  10
ALA A   9
SER A  55
None
None
TRH  A 500 (-2.9A)
None
None
1.06A 3pghD-5ifyA:
undetectable
3pghD-5ifyA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3RR3_C_FLRC700_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 12 LEU A  27
LEU A  67
GLY A  10
ALA A   9
SER A  55
None
None
TRH  A 500 (-2.9A)
None
None
1.01A 3rr3C-5ifyA:
undetectable
3rr3C-5ifyA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3RR3_D_FLRD700_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 12 LEU A  27
LEU A  67
GLY A  10
ALA A   9
SER A  55
None
None
TRH  A 500 (-2.9A)
None
None
1.02A 3rr3D-5ifyA:
undetectable
3rr3D-5ifyA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UFG_B_LEUB289_0
(GLYCYL-TRNA
SYNTHETASE ALPHA
SUBUNIT)
2ixl DTDP-4-DEHYDRORHAMNO
SE 3,5-EPIMERASE

(Streptococcus
suis)
3 / 3 PHE A 129
SER A  65
SER A  67
None
TRH  A1198 ( 4.9A)
None
0.98A 3ufgB-2ixlA:
undetectable
3ufgB-2ixlA:
21.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4BLV_A_SAMA1281_1
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE J)
5nv8 EF-P ARGININE 32
RHAMNOSYL-TRANSFERAS
E

(Pseudomonas
putida)
4 / 6 HIS A  32
HIS A 371
ASP A 274
ASP A 364
None
None
TRH  A 401 (-4.1A)
None
1.33A 4blvA-5nv8A:
undetectable
4blvA-5nv8A:
22.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4BVA_A_T3A1314_1
(THIOMORPHOLINE-CARBO
XYLATE DEHYDROGENASE)
5nv8 EF-P ARGININE 32
RHAMNOSYL-TRANSFERAS
E

(Pseudomonas
putida)
5 / 12 VAL A  20
GLY A  16
PHE A 276
SER A 128
PRO A 141
None
TRH  A 401 (-3.1A)
None
None
None
1.29A 4bvaA-5nv8A:
undetectable
4bvaA-5nv8A:
25.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KIC_A_SAMA401_0
(METHYLTRANSFERASE
MPPJ)
2ixc DTDP-4-DEHYDRORHAMNO
SE 3,5-EPIMERASE
RMLC

(Mycobacterium
tuberculosis)
5 / 12 GLY A  60
GLY A 120
ARG A  59
ILE A 146
ALA A 174
TRH  A1199 ( 4.3A)
TRH  A1199 ( 3.9A)
TRH  A1199 (-4.0A)
None
None
1.15A 4kicA-2ixcA:
undetectable
4kicA-2ixcA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MK4_A_CHDA504_0
(FERROCHELATASE,
MITOCHONDRIAL)
2x0f WSAF
(Geobacillus
stearothermophil
us)
4 / 8 SER A 251
VAL A 252
VAL A 282
GLY A 301
None
GOL  A1415 (-3.8A)
TRH  A 416 ( 4.4A)
None
0.90A 4mk4A-2x0fA:
3.7
4mk4A-2x0fA:
22.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5C0O_H_SAMH301_1
(TRNA
(ADENINE(58)-N(1))-M
ETHYLTRANSFERASE
TRMI)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
4 / 5 THR A  56
GLY A  11
HIS A  21
ASP A  59
None
TRH  A 500 (-4.9A)
None
None
1.25A 5c0oH-5ifyA:
undetectable
5c0oH-5ifyA:
21.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EYP_B_LOCB502_1
(TUBULIN ALPHA CHAIN
TUBULIN BETA CHAIN)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
3 / 3 SER A 169
ALA A 171
VAL A 172
None
None
TRH  A 500 (-3.9A)
0.57A 5eypA-5ifyA:
undetectable
5eypA-5ifyA:
20.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JVZ_B_FLPB601_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
5 / 12 LEU A  27
LEU A  67
GLY A  10
ALA A   9
SER A  55
None
None
TRH  A 500 (-2.9A)
None
None
1.09A 5jvzB-5ifyA:
undetectable
5jvzB-5ifyA:
19.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ODI_D_ACTD202_0
(METHYL-VIOLOGEN
REDUCING
HYDROGENASE, SUBUNIT
D)
4j7h EVAA 2,3-DEHYDRATASE
(Amycolatopsis
orientalis)
3 / 3 HIS A 297
GLU A 298
TRP A 288
TRH  A 502 ( 4.7A)
None
TRH  A 502 (-3.9A)
1.18A 5odiD-4j7hA:
undetectable
5odiD-4j7hA:
12.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ODR_D_ACTD202_0
(METHYL-VIOLOGEN
REDUCING
HYDROGENASE, SUBUNIT
D)
4j7h EVAA 2,3-DEHYDRATASE
(Amycolatopsis
orientalis)
3 / 3 HIS A 297
GLU A 298
TRP A 288
TRH  A 502 ( 4.7A)
None
TRH  A 502 (-3.9A)
1.19A 5odrD-4j7hA:
undetectable
5odrD-4j7hA:
12.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XDX_C_CHDC308_0
(CYTOCHROME C OXIDASE
SUBUNIT 3
CYTOCHROME C OXIDASE
SUBUNIT VIIA-HEART)
5nv8 EF-P ARGININE 32
RHAMNOSYL-TRANSFERAS
E

(Pseudomonas
putida)
4 / 5 LEU A 250
PHE A 252
LEU A 177
PHE A 173
None
TRH  A 401 (-3.6A)
None
None
1.24A 5xdxC-5nv8A:
undetectable
5xdxJ-5nv8A:
undetectable
5xdxC-5nv8A:
18.59
5xdxJ-5nv8A:
11.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XDX_P_CHDP306_0
(CYTOCHROME C OXIDASE
SUBUNIT 3
CYTOCHROME C OXIDASE
SUBUNIT VIIA-HEART)
5nv8 EF-P ARGININE 32
RHAMNOSYL-TRANSFERAS
E

(Pseudomonas
putida)
4 / 5 LEU A 250
PHE A 252
LEU A 177
PHE A 173
None
TRH  A 401 (-3.6A)
None
None
1.28A 5xdxP-5nv8A:
undetectable
5xdxW-5nv8A:
undetectable
5xdxP-5nv8A:
18.59
5xdxW-5nv8A:
11.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIW_D_LOCD503_1
(TUBULIN ALPHA-1B
CHAIN
TUBULIN BETA CHAIN)
5ify GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Burkholderia
vietnamiensis)
3 / 3 SER A 169
ALA A 171
VAL A 172
None
None
TRH  A 500 (-3.9A)
0.53A 5xiwC-5ifyA:
undetectable
5xiwC-5ifyA:
16.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GNG_B_QPSB601_2
(-)
4j7h EVAA 2,3-DEHYDRATASE
(Amycolatopsis
orientalis)
5 / 12 GLY A 354
GLY A 355
GLY A 430
ASN A 450
GLN A 367
None
None
None
None
TRH  A 502 (-4.1A)
0.97A 6gngB-4j7hA:
undetectable
6gngB-4j7hA:
23.55