SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'SQS'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3D91_B_REMB350_1
(RENIN)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
5 / 12 GLN A 128
GLY A  80
ASP A  81
ALA A 115
SER A 168
None
None
None
SQS  A 401 ( 4.8A)
SQS  A 401 (-3.1A)
1.19A 3d91B-3vzbA:
undetectable
3d91B-3vzbA:
17.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3E9R_A_ACTA700_0
(PURINE-NUCLEOSIDE
PHOSPHORYLASE)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
4 / 6 GLY A 113
GLU A 189
GLY A 269
MET A 272
SQS  A 401 ( 4.2A)
None
None
SQS  A 401 (-3.5A)
0.96A 3e9rA-3vzbA:
undetectable
3e9rA-3vzbA:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3E9R_C_ACTC700_0
(PURINE-NUCLEOSIDE
PHOSPHORYLASE)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
4 / 6 GLY A 113
GLU A 189
GLY A 269
MET A 272
SQS  A 401 ( 4.2A)
None
None
SQS  A 401 (-3.5A)
0.96A 3e9rC-3vzbA:
undetectable
3e9rC-3vzbA:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3G2O_A_SAMA500_0
(PCZA361.24)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
5 / 12 GLY A 113
LEU A 268
LEU A  83
SER A 168
GLU A 343
SQS  A 401 ( 4.2A)
SQS  A 401 (-4.4A)
None
SQS  A 401 (-3.1A)
None
1.03A 3g2oA-3vzbA:
undetectable
3g2oA-3vzbA:
24.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UDA_A_DEXA1985_2
(MINERALOCORTICOID
RECEPTOR)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
4 / 6 LEU A 259
PHE A 303
THR A 196
VAL A 177
None
None
SQS  A 401 ( 4.3A)
SQS  A 401 ( 4.5A)
1.09A 4udaA-3vzbA:
undetectable
4udaA-3vzbA:
24.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EWU_A_BEZA1401_0
(MAGNESIUM-CHELATASE
SUBUNIT CHLH,
CHLOROPLASTIC)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
4 / 6 GLY A 195
THR A 196
SER A 181
VAL A 177
None
SQS  A 401 ( 4.3A)
None
SQS  A 401 ( 4.5A)
0.87A 5ewuA-3vzbA:
undetectable
5ewuA-3vzbA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IKR_A_ID8A601_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
5 / 12 LEU A 263
GLY A 269
ALA A 115
SER A 119
LEU A 116
None
None
SQS  A 401 ( 4.8A)
None
None
1.05A 5ikrA-3vzbA:
undetectable
5ikrA-3vzbA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HU9_S_PCFS603_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 8
CYTOCHROME C OXIDASE
POLYPEPTIDE 5A,
MITOCHONDRIAL)
3vzb SPHINGOSINE KINASE 1
(Homo
sapiens)
4 / 7 GLY A  82
HIS A  85
VAL A  88
SER A 168
None
None
None
SQS  A 401 (-3.1A)
0.94A 6hu9S-3vzbA:
undetectable
6hu9q-3vzbA:
undetectable
6hu9S-3vzbA:
12.36
6hu9q-3vzbA:
14.44