SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'SMA'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_A_ESTA351_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 12 VAL C 161
GLY C 164
LEU C 165
GLY C 158
PHE C 194
SMA  C 503 (-4.4A)
None
None
SMA  C 503 (-3.3A)
SMA  C 503 (-4.7A)
1.07A 1fduA-1zrtC:
undetectable
1fduA-1zrtC:
22.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_A_ESTA351_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
5 / 12 VAL A 161
GLY A 164
LEU A 165
GLY A 158
PHE A 194
SMA  A   1 (-4.1A)
None
None
SMA  A   1 (-3.1A)
SMA  A   1 (-4.6A)
1.11A 1fduA-2qjpA:
undetectable
1fduA-2qjpA:
23.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_A_ESTA351_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
5 / 12 VAL A 161
GLY A 164
LEU A 165
GLY A 158
PHE A 194
SMA  A 502 (-4.3A)
None
None
SMA  A 502 (-3.5A)
SMA  A 502 (-4.5A)
1.01A 1fduA-2yiuA:
undetectable
1fduA-2yiuA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_C_ESTC353_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 12 VAL C 161
GLY C 164
LEU C 165
GLY C 158
MET C 336
SMA  C 503 (-4.4A)
None
None
SMA  C 503 (-3.3A)
SMA  C 503 (-3.3A)
1.12A 1fduC-1zrtC:
undetectable
1fduC-1zrtC:
22.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_C_ESTC353_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
5 / 12 VAL A 161
GLY A 164
LEU A 165
GLY A 158
MET A 336
SMA  A   1 (-4.1A)
None
None
SMA  A   1 (-3.1A)
SMA  A   1 (-3.6A)
1.16A 1fduC-2qjpA:
undetectable
1fduC-2qjpA:
23.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_C_ESTC353_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
5 / 12 VAL A 161
GLY A 164
LEU A 165
GLY A 158
MET A 336
SMA  A 502 (-4.3A)
None
None
SMA  A 502 (-3.5A)
SMA  A 502 (-3.6A)
1.09A 1fduC-2yiuA:
undetectable
1fduC-2yiuA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MX8_A_RTLA135_0
(CELLULAR
RETINOL-BINDING
PROTEIN I, HOLO)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 12 PHE C 404
ALA C 346
TYR C 136
MET C 140
ILE C 112
None
None
None
SMA  C 503 (-4.2A)
HEM  C 502 (-3.5A)
1.29A 1mx8A-1zrtC:
undetectable
1mx8A-1zrtC:
14.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RL8_A_RITA9001_2
(PROTEASE RETROPEPSIN)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 12 LEU C 305
GLY C 338
ALA C 339
ALA C 307
ILE C 304
SMA  C 503 ( 4.6A)
None
None
None
None
0.86A 1rl8B-1zrtC:
undetectable
1rl8B-1zrtC:
12.97
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
8 / 12 GLY C 158
ILE C 162
ILE C 292
PRO C 294
PHE C 301
TYR C 302
LEU C 305
ILE C 340
SMA  C 503 (-3.3A)
None
SMA  C 503 ( 4.5A)
SMA  C 503 (-4.1A)
SMA  C 503 (-4.7A)
SMA  C 503 (-4.2A)
SMA  C 503 ( 4.6A)
None
0.93A 4pd4C-1zrtC:
48.6
4pd4C-1zrtC:
44.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
8 / 12 GLY C 158
ILE C 162
PRO C 294
PHE C 301
TYR C 302
LEU C 305
MET C 336
ILE C 340
SMA  C 503 (-3.3A)
None
SMA  C 503 (-4.1A)
SMA  C 503 (-4.7A)
SMA  C 503 (-4.2A)
SMA  C 503 ( 4.6A)
SMA  C 503 (-3.3A)
None
0.88A 4pd4C-1zrtC:
48.6
4pd4C-1zrtC:
44.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
8 / 12 GLY C 158
VAL C 161
ILE C 162
ILE C 292
PHE C 301
TYR C 302
LEU C 305
ILE C 340
SMA  C 503 (-3.3A)
SMA  C 503 (-4.4A)
None
SMA  C 503 ( 4.5A)
SMA  C 503 (-4.7A)
SMA  C 503 (-4.2A)
SMA  C 503 ( 4.6A)
None
0.86A 4pd4C-1zrtC:
48.6
4pd4C-1zrtC:
44.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
8 / 12 GLY C 158
VAL C 161
ILE C 162
PHE C 301
TYR C 302
LEU C 305
MET C 336
ILE C 340
SMA  C 503 (-3.3A)
SMA  C 503 (-4.4A)
None
SMA  C 503 (-4.7A)
SMA  C 503 (-4.2A)
SMA  C 503 ( 4.6A)
SMA  C 503 (-3.3A)
None
0.82A 4pd4C-1zrtC:
48.6
4pd4C-1zrtC:
44.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
7 / 12 GLY A 158
VAL A 161
ILE A 162
ILE A 292
PRO A 294
MET A 336
ILE A 340
SMA  A   1 (-3.1A)
SMA  A   1 (-4.1A)
SMA  A   1 (-4.5A)
SMA  A   1 ( 4.7A)
SMA  A   1 (-3.8A)
SMA  A   1 (-3.6A)
None
0.85A 4pd4C-2qjpA:
49.8
4pd4C-2qjpA:
45.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
9 / 12 GLY A 158
VAL A 161
ILE A 162
PRO A 294
PHE A 301
TYR A 302
LEU A 305
MET A 336
ILE A 340
SMA  A   1 (-3.1A)
SMA  A   1 (-4.1A)
SMA  A   1 (-4.5A)
SMA  A   1 (-3.8A)
None
SMA  A   1 (-4.4A)
SMA  A   1 ( 4.3A)
SMA  A   1 (-3.6A)
None
0.60A 4pd4C-2qjpA:
49.8
4pd4C-2qjpA:
45.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
9 / 12 GLY A 158
VAL A 161
ILE A 162
ILE A 292
PRO A 294
PHE A 301
LEU A 305
MET A 336
ILE A 340
SMA  A 502 (-3.5A)
SMA  A 502 (-4.3A)
SMA  A 502 ( 4.5A)
SMA  A 502 (-4.6A)
SMA  A 502 ( 3.8A)
None
SMA  A 502 ( 4.4A)
SMA  A 502 (-3.6A)
None
0.78A 4pd4C-2yiuA:
50.0
4pd4C-2yiuA:
44.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4PD4_C_AOQC4003_1
(CYTOCHROME B)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
9 / 12 GLY A 158
VAL A 161
ILE A 162
PRO A 294
PHE A 301
TYR A 302
LEU A 305
MET A 336
ILE A 340
SMA  A 502 (-3.5A)
SMA  A 502 (-4.3A)
SMA  A 502 ( 4.5A)
SMA  A 502 ( 3.8A)
None
SMA  A 502 (-4.5A)
SMA  A 502 ( 4.4A)
SMA  A 502 (-3.6A)
None
0.56A 4pd4C-2yiuA:
50.0
4pd4C-2yiuA:
44.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XP4_A_COCA706_1
(DOPAMINE TRANSPORTER)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
5 / 11 ALA A  76
VAL A 186
GLY A 146
SER A 155
GLY A 158
None
None
HEM  A 500 (-3.5A)
None
SMA  A 502 (-3.5A)
1.27A 4xp4A-2yiuA:
undetectable
4xp4A-2yiuA:
23.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IZF_E_AZ1E2_1
(CAMP-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT
ALPHA
6J9-ZEU-DAR-ACA-DAR-
NH2)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
4 / 7 GLY C 158
PHE C 166
LEU C 180
GLU C 295
SMA  C 503 (-3.3A)
SMA  C 503 (-4.2A)
SMA  C 503 (-4.1A)
SMA  C 503 (-3.7A)
0.85A 5izfA-1zrtC:
undetectable
5izfA-1zrtC:
20.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IZF_E_AZ1E2_1
(CAMP-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT
ALPHA
6J9-ZEU-DAR-ACA-DAR-
NH2)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
4 / 7 GLY A 158
PHE A 166
LEU A 180
GLU A 295
SMA  A   1 (-3.1A)
None
SMA  A   1 ( 4.3A)
SMA  A   1 (-2.9A)
0.79A 5izfA-2qjpA:
undetectable
5izfA-2qjpA:
19.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IZF_E_AZ1E2_1
(CAMP-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT
ALPHA
6J9-ZEU-DAR-ACA-DAR-
NH2)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
4 / 7 GLY A 158
PHE A 166
LEU A 180
GLU A 295
SMA  A 502 (-3.5A)
SMA  A 502 ( 4.7A)
SMA  A 502 ( 4.2A)
SMA  A 502 (-2.5A)
0.84A 5izfA-2yiuA:
undetectable
5izfA-2yiuA:
19.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5KKZ_A_ASCA1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
4 / 6 HIS C 291
VAL C 293
TYR C 302
ARG C 306
None
None
SMA  C 503 (-4.2A)
None
0.90A 5kkzA-1zrtC:
51.3
5kkzG-1zrtC:
undetectable
5kkzA-1zrtC:
82.47
5kkzG-1zrtC:
15.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5KKZ_A_ASCA1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
4 / 6 HIS A 291
VAL A 293
TYR A 302
ARG A 306
None
None
SMA  A   1 (-4.4A)
None
0.45A 5kkzA-2qjpA:
57.5
5kkzG-2qjpA:
undetectable
5kkzA-2qjpA:
100.00
5kkzG-2qjpA:
16.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5KKZ_A_ASCA1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
4 / 6 HIS A 291
VAL A 293
TYR A 302
ARG A 306
None
None
SMA  A 502 (-4.5A)
None
0.45A 5kkzA-2yiuA:
57.1
5kkzG-2yiuA:
undetectable
5kkzA-2yiuA:
83.37
5kkzG-2yiuA:
18.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_E_ASCE1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 7 HIS C 291
ILE C 292
VAL C 293
TYR C 302
ARG C 306
None
SMA  C 503 ( 4.5A)
None
SMA  C 503 (-4.2A)
None
0.91A 5kkzC-1zrtC:
undetectable
5kkzE-1zrtC:
51.1
5kkzC-1zrtC:
15.63
5kkzE-1zrtC:
82.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_E_ASCE1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
5 / 7 HIS A 291
ILE A 292
VAL A 293
TYR A 302
ARG A 306
None
SMA  A   1 ( 4.7A)
None
SMA  A   1 (-4.4A)
None
0.46A 5kkzC-2qjpA:
undetectable
5kkzE-2qjpA:
57.4
5kkzC-2qjpA:
16.78
5kkzE-2qjpA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_E_ASCE1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
5 / 7 HIS A 291
ILE A 292
VAL A 293
TYR A 302
ARG A 306
None
SMA  A 502 (-4.6A)
None
SMA  A 502 (-4.5A)
None
0.41A 5kkzC-2yiuA:
undetectable
5kkzE-2yiuA:
57.0
5kkzC-2yiuA:
18.16
5kkzE-2yiuA:
83.37
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5KKZ_K_ASCK1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 7 HIS C 291
ILE C 292
VAL C 293
TYR C 302
ARG C 306
None
SMA  C 503 ( 4.5A)
None
SMA  C 503 (-4.2A)
None
0.93A 5kkzK-1zrtC:
54.3
5kkzQ-1zrtC:
undetectable
5kkzK-1zrtC:
82.47
5kkzQ-1zrtC:
15.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5KKZ_K_ASCK1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
5 / 7 HIS A 291
ILE A 292
VAL A 293
TYR A 302
ARG A 306
None
SMA  A   1 ( 4.7A)
None
SMA  A   1 (-4.4A)
None
0.47A 5kkzK-2qjpA:
61.1
5kkzQ-2qjpA:
undetectable
5kkzK-2qjpA:
100.00
5kkzQ-2qjpA:
16.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5KKZ_K_ASCK1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
5 / 7 HIS A 291
ILE A 292
VAL A 293
TYR A 302
ARG A 306
None
SMA  A 502 (-4.6A)
None
SMA  A 502 (-4.5A)
None
0.42A 5kkzK-2yiuA:
60.8
5kkzQ-2yiuA:
undetectable
5kkzK-2yiuA:
83.37
5kkzQ-2yiuA:
18.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_O_ASCO1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
1zrt CYTOCHROME B
(Rhodobacter
capsulatus)
5 / 7 HIS C 291
ILE C 292
VAL C 293
TYR C 302
ARG C 306
None
SMA  C 503 ( 4.5A)
None
SMA  C 503 (-4.2A)
None
0.85A 5kkzM-1zrtC:
undetectable
5kkzO-1zrtC:
51.3
5kkzM-1zrtC:
15.63
5kkzO-1zrtC:
82.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_O_ASCO1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2qjp CYTOCHROME B
(Rhodobacter
sphaeroides)
5 / 7 HIS A 291
ILE A 292
VAL A 293
TYR A 302
ARG A 306
None
SMA  A   1 ( 4.7A)
None
SMA  A   1 (-4.4A)
None
0.44A 5kkzM-2qjpA:
undetectable
5kkzO-2qjpA:
57.4
5kkzM-2qjpA:
16.78
5kkzO-2qjpA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_O_ASCO1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
2yiu CYTOCHROME B
(Paracoccus
denitrificans)
5 / 7 HIS A 291
ILE A 292
VAL A 293
TYR A 302
ARG A 306
None
SMA  A 502 (-4.6A)
None
SMA  A 502 (-4.5A)
None
0.41A 5kkzM-2yiuA:
undetectable
5kkzO-2yiuA:
57.1
5kkzM-2yiuA:
18.16
5kkzO-2yiuA:
83.37