SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'RUB'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1D4F_D_ADND604_2
(S-ADENOSYLHOMOCYSTEI
NE HYDROLASE)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		4 / 5 THR A 271
GLU A 204
HIS A 292
HIS A 298
 None
RUB  A 501 (-3.2A)
None
RUB  A 501 ( 4.9A)
 1.47A 1d4fD-4mkvA:
undetectable		 1d4fD-4mkvA:
20.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HRK_A_CHDA1502_0
(FERROCHELATASE)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		4 / 8 MET A 387
LEU A 197
GLY A 404
TRP A 462
 None
None
RUB  A 501 (-3.7A)
None
 1.02A 1hrkA-4mkvA:
undetectable		 1hrkA-4mkvA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2OXT_A_SAMA300_1
(NUCLEOSIDE-2'-O-METH
YLTRANSFERASE)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		3 / 3 SER A 321
HIS A 292
ASP A 203
 None
None
RUB  A 501 (-3.2A)
 0.71A 2oxtA-4mkvA:
undetectable		 2oxtA-4mkvA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TTP_A_017A201_1
(HIV-1 PROTEASE)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		5 / 10 GLY A 329
ALA A 328
GLY A 344
ILE A 341
LEU A 314
 RUB  A 501 ( 4.5A)
None
None
None
None
 0.93A 3ttpA-4mkvA:
undetectable		 3ttpA-4mkvA:
13.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4AQL_A_TXCA1452_2
(GUANINE DEAMINASE)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		4 / 5 HIS A 294
LEU A 169
LEU A 400
ASP A 397
 RUB  A 501 ( 4.8A)
None
None
None
 1.30A 4aqlA-4mkvA:
5.9		 4aqlA-4mkvA:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4TZC_D_EF2D505_1
(PROTEIN CEREBLON)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		4 / 8 TYR A 269
THR A 271
HIS A 327
PHE A 345
 None
None
RUB  A 501 (-4.1A)
None
 1.00A 4tzcB-4mkvA:
undetectable
4tzcD-4mkvA:
undetectable		 4tzcB-4mkvA:
13.32
4tzcD-4mkvA:
13.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ESG_A_1YNA701_1
(LANOSTEROL 14-ALPHA
DEMETHYLASE)		 4mkv RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN
(Pisum
sativum) 		5 / 12 GLU A 425
VAL A 418
GLY A 380
THR A 330
LEU A 390
 None
None
RUB  A 501 (-3.3A)
None
None
 1.40A 5esgA-4mkvA:
undetectable		 5esgA-4mkvA:
22.52