SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'RDC'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1S14_A_NOVA1300_1
(TOPOISOMERASE IV
SUBUNIT B)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		5 / 12 ASN B  42
SER B  43
ASP B  45
ASP B  76
THR B 170
 RDC  B 531 ( 4.1A)
RDC  B 531 (-3.2A)
None
RDC  B 531 (-2.9A)
RDC  B 531 (-2.5A)
 0.69A 1s14A-2zbkB:
15.0		 1s14A-2zbkB:
16.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2C49_B_ADNB1301_1
(SUGAR KINASE MJ0406)		 3cgy VIRULENCE SENSOR
HISTIDINE KINASE
PHOQ
(Salmonella
enterica) 		4 / 7 ALA A 471
ASP A 416
GLY A 470
GLY A 420
 RDC  A 700 (-3.3A)
RDC  A 700 (-3.1A)
None
RDC  A 700 (-4.1A)
 0.74A 2c49B-3cgyA:
undetectable		 2c49B-3cgyA:
22.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DEU_B_SALB306_1
(TRANSCRIPTIONAL
REGULATOR SLYA)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		4 / 6 ILE B  56
SER B  43
LEU B  44
THR B  47
 None
RDC  B 531 (-3.2A)
None
None
 0.79A 3deuB-2zbkB:
undetectable		 3deuB-2zbkB:
15.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LPS_A_NOVA901_1
(TOPOISOMERASE IV
SUBUNIT B)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		5 / 12 ASN B  42
SER B  43
ASP B  45
ASP B  76
THR B 170
 RDC  B 531 ( 4.1A)
RDC  B 531 (-3.2A)
None
RDC  B 531 (-2.9A)
RDC  B 531 (-2.5A)
 0.67A 3lpsA-2zbkB:
19.9		 3lpsA-2zbkB:
22.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		5 / 11 ASN B  42
SER B  43
ASP B  45
ASP B  76
THR B 170
 RDC  B 531 ( 4.1A)
RDC  B 531 (-3.2A)
None
RDC  B 531 (-2.9A)
RDC  B 531 (-2.5A)
 0.67A 4urnA-2zbkB:
16.1		 4urnA-2zbkB:
17.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4URN_B_NOVB2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		5 / 11 ASN B  42
SER B  43
ASP B  45
ASP B  76
THR B 170
 RDC  B 531 ( 4.1A)
RDC  B 531 (-3.2A)
None
RDC  B 531 (-2.9A)
RDC  B 531 (-2.5A)
 0.70A 4urnB-2zbkB:
16.0		 4urnB-2zbkB:
17.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4URN_C_NOVC2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		5 / 11 ASN B  42
SER B  43
ASP B  45
ASP B  76
THR B 170
 RDC  B 531 ( 4.1A)
RDC  B 531 (-3.2A)
None
RDC  B 531 (-2.9A)
RDC  B 531 (-2.5A)
 0.65A 4urnC-2zbkB:
16.3		 4urnC-2zbkB:
17.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4URO_D_NOVD2000_1
(DNA GYRASE SUBUNIT B)		 2zbk TYPE 2 DNA
TOPOISOMERASE 6
SUBUNIT B
(Sulfolobus
shibatae) 		5 / 12 SER B  43
ASP B  76
ILE B  81
PRO B  82
THR B 170
 RDC  B 531 (-3.2A)
RDC  B 531 (-2.9A)
RDC  B 531 (-4.3A)
None
RDC  B 531 (-2.5A)
 0.87A 4uroD-2zbkB:
16.4		 4uroD-2zbkB:
18.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5W7P_A_SAMA501_0
(OXAC)		 3cgy VIRULENCE SENSOR
HISTIDINE KINASE
PHOQ
(Salmonella
enterica) 		5 / 12 GLU A 415
ALA A 471
GLY A 470
SER A 466
LEU A 447
 None
RDC  A 700 (-3.3A)
None
None
RDC  A 700 (-3.9A)
 1.11A 5w7pA-3cgyA:
undetectable		 5w7pA-3cgyA:
18.45