SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'R03'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1CEA_B_ACAB90_1
(PLASMINOGEN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 7 ARG A 488
ASP A 376
ASP A 377
TYR A 420
None
R03  A 800 ( 4.1A)
R03  A 800 ( 4.3A)
R03  A 800 ( 4.9A)
1.39A 1ceaB-1h39A:
0.0
1ceaB-1h39A:
9.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1CEB_A_AMHA90_1
(PLASMINOGEN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 7 ARG A 488
ASP A 376
ASP A 377
TYR A 420
None
R03  A 800 ( 4.1A)
R03  A 800 ( 4.3A)
R03  A 800 ( 4.9A)
1.25A 1cebA-1h39A:
undetectable
1cebA-1h39A:
9.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GX9_A_REAA1163_1
(BETA-LACTOGLOBULIN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
5 / 11 LEU A 177
VAL A 148
ILE A 432
VAL A 440
PHE A 166
None
None
None
R03  A 800 ( 4.9A)
None
1.06A 1gx9A-1h39A:
0.0
1gx9A-1h39A:
13.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QCA_A_FUAA221_1
(TYPE III
CHLORAMPHENICOL
ACETYLTRANSFERASE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 7 CYH A 435
PHE A 166
PHE A 434
LEU A 225
R03  A 800 ( 4.6A)
None
None
None
1.11A 1qcaA-1h39A:
undetectable
1qcaA-1h39A:
14.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y6R_B_CTCB1385_0
(TETX2 PROTEIN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 8 GLN A 366
GLY A 260
GLY A 600
MET A  42
None
None
None
R03  A 800 ( 4.9A)
0.76A 2y6rB-1h39A:
undetectable
2y6rB-1h39A:
22.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CCF_A_BEZA261_0
(CYCLOPROPANE-FATTY-A
CYL-PHOSPHOLIPID
SYNTHASE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 8 GLY A 600
TRP A 312
PHE A 365
TYR A 609
None
R03  A 800 (-3.9A)
R03  A 800 ( 4.0A)
None
1.42A 3ccfA-1h39A:
undetectable
3ccfA-1h39A:
17.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ELW_A_SAMA4633_0
(METHYLTRANSFERASE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
6 / 12 GLY A 498
GLY A 490
GLY A 496
THR A 599
LEU A 607
PHE A 365
None
None
None
None
None
R03  A 800 ( 4.0A)
1.48A 3elwA-1h39A:
undetectable
3elwA-1h39A:
17.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KO0_A_TFPA201_1
(PROTEIN S100-A4)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
5 / 9 GLY A 608
PHE A 129
PHE A 605
GLY A 600
PHE A 601
None
None
R03  A 800 (-3.6A)
None
R03  A 800 (-4.6A)
1.45A 3ko0A-1h39A:
undetectable
3ko0C-1h39A:
undetectable
3ko0A-1h39A:
9.28
3ko0C-1h39A:
9.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KO0_R_TFPR201_1
(PROTEIN S100-A4)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
5 / 10 GLY A 608
PHE A 129
PHE A 605
GLY A 600
PHE A 601
None
None
R03  A 800 (-3.6A)
None
R03  A 800 (-4.6A)
1.47A 3ko0R-1h39A:
0.0
3ko0T-1h39A:
undetectable
3ko0R-1h39A:
9.28
3ko0T-1h39A:
9.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V3N_B_MIYB2001_1
(TETX2 PROTEIN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 8 GLN A 366
GLY A 260
GLY A 600
MET A  42
None
None
None
R03  A 800 ( 4.9A)
0.90A 3v3nB-1h39A:
undetectable
3v3nB-1h39A:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V3N_C_MIYC2001_1
(TETX2 PROTEIN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 8 GLN A 366
GLY A 260
GLY A 600
MET A  42
None
None
None
R03  A 800 ( 4.9A)
0.90A 3v3nC-1h39A:
undetectable
3v3nC-1h39A:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V3O_B_T1CB405_1
(TETX2 PROTEIN)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
5 / 12 GLN A 366
GLY A 260
GLY A 600
ASN A  39
MET A  42
None
None
None
None
R03  A 800 ( 4.9A)
1.11A 3v3oB-1h39A:
0.0
3v3oB-1h39A:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MUB_A_OAQA302_0
(SULFOTRANSFERASE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
5 / 12 PRO A 429
HIS A 431
VAL A 440
GLY A 603
ASP A 604
None
None
R03  A 800 ( 4.9A)
None
None
1.40A 4mubA-1h39A:
undetectable
4mubA-1h39A:
17.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZE1_A_X2NA602_1
(LANOSTEROL 14-ALPHA
DEMETHYLASE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
5 / 12 TYR A 609
GLY A 598
GLY A 167
PHE A 365
THR A 599
None
None
None
R03  A 800 ( 4.0A)
None
1.28A 4ze1A-1h39A:
0.0
4ze1A-1h39A:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DV4_A_NMYA601_2
(CCR4-NOT
TRANSCRIPTION
COMPLEX SUBUNIT
6-LIKE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
3 / 3 GLU A 446
TRP A 489
ASN A 492
None
R03  A 800 (-4.7A)
None
0.70A 5dv4A-1h39A:
undetectable
5dv4A-1h39A:
22.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HWA_A_GCSA302_1
(CHITOSANASE)
1h39 SQUALENE--HOPENE
CYCLASE

(Alicyclobacillus
acidocaldarius)
4 / 7 ASP A 447
ASP A 376
GLY A 418
TYR A 474
None
R03  A 800 ( 4.1A)
None
None
1.03A 5hwaA-1h39A:
0.0
5hwaA-1h39A:
17.12