SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'PGD'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1T46_A_STIA3_2
(HOMO SAPIENS V-KIT
HARDY-ZUCKERMAN 4
FELINE SARCOMA VIRAL
ONCOGENE HOMOLOG)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
4 / 7 VAL A 164
VAL A 338
TYR A 603
ARG A 326
None
None
None
PGD  A 783 ( 2.6A)
1.30A 1t46A-1dmsA:
undetectable
1t46A-1dmsA:
18.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1XMU_B_ROFB102_1
(CAMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE 4B)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
4 / 5 THR A  39
MET A  41
GLN A 193
PHE A 645
None
None
PGD  A 783 (-4.1A)
None
1.26A 1xmuB-1dmsA:
undetectable
1xmuB-1dmsA:
18.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Q5K_A_AB1A201_2
(PROTEASE)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
5 / 12 GLY A 754
ASP A 441
GLY A 744
PRO A 398
VAL A 399
PGD  A 782 (-3.8A)
None
None
None
None
0.87A 2q5kB-1dmsA:
undetectable
2q5kB-1dmsA:
8.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3EM6_A_017A200_1
(PROTEASE)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
5 / 8 GLY A 321
ALA A 185
ASP A 221
LEU A 318
VAL A 244
PGD  A 783 (-3.6A)
PGD  A 783 (-3.3A)
PGD  A 783 (-2.9A)
None
None
1.29A 3em6A-1dmsA:
undetectable
3em6A-1dmsA:
8.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3QOW_A_SAMA417_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
5 / 12 TYR A 114
GLY A 115
GLY A 142
ALA A 400
PHE A 110
MM4  A 784 ( 4.3A)
PGD  A 782 (-3.4A)
None
None
None
1.24A 3qowA-1dmsA:
undetectable
3qowA-1dmsA:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WEL_A_ACRA1001_2
(ALPHA-GLUCOSIDASE)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
4 / 6 ILE A 154
ILE A 220
TRP A 184
MET A 324
None
PGD  A 783 (-4.7A)
None
None
1.49A 3welA-1dmsA:
undetectable
3welA-1dmsA:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FGK_A_0TXA302_1
(RIBOSYLDIHYDRONICOTI
NAMIDE DEHYDROGENASE
[QUINONE])
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
4 / 7 GLY A 716
GLY A 717
TYR A 733
GLU A 715
None
None
None
PGD  A 782 (-3.9A)
1.03A 4fgkB-1dmsA:
undetectable
4fgkB-1dmsA:
15.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ODO_B_FK5B203_2
(PEPTIDYL-PROLYL
CIS-TRANS ISOMERASE
SLYD)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
3 / 3 ALA A 448
GLN A 440
GLY A 754
None
PGD  A 782 (-4.4A)
PGD  A 782 (-3.8A)
0.62A 4odoC-1dmsA:
0.0
4odoC-1dmsA:
12.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCI_A_SAMA2409_1
(RNA-DIRECTED RNA
POLYMERASE L)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
4 / 4 SER A 323
ASP A 221
ASP A 234
ASP A 243
PGD  A 783 (-2.6A)
PGD  A 783 (-2.9A)
None
PGD  A 783 (-2.8A)
1.35A 4uciA-1dmsA:
2.5
4uciA-1dmsA:
17.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCI_B_SAMB2409_1
(RNA-DIRECTED RNA
POLYMERASE L)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
4 / 4 SER A 323
ASP A 221
ASP A 234
ASP A 243
PGD  A 783 (-2.6A)
PGD  A 783 (-2.9A)
None
PGD  A 783 (-2.8A)
1.34A 4uciB-1dmsA:
0.0
4uciB-1dmsA:
17.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OM2_B_DXTB501_1
(ALPHA-1-ANTICHYMOTRY
PSIN)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
5 / 9 LEU A 307
ALA A 308
PHE A 311
VAL A 182
ILE A 220
None
None
None
None
PGD  A 783 (-4.7A)
1.20A 5om2A-1dmsA:
undetectable
5om2B-1dmsA:
undetectable
5om2A-1dmsA:
7.22
5om2B-1dmsA:
4.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5SYF_B_TA1B502_1
(TUBULIN BETA CHAIN)
1dms DMSO REDUCTASE
(Rhodobacter
capsulatus)
5 / 12 ASP A 459
LEU A 657
ASP A  47
SER A 118
ARG A 658
PGD  A 782 (-3.0A)
None
None
PGD  A 782 (-2.6A)
None
1.28A 5syfB-1dmsA:
2.2
5syfB-1dmsA:
20.23