SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'PE3'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EPB_A_9CRA165_1
(EPIDIDYMAL RETINOIC
ACID-BINDING PROTEIN)		 1xwv DER F II
(Dermatophagoides
farinae) 		6 / 12 ILE A  29
LEU A  37
VAL A  65
ALA A  56
ILE A  54
ILE A  52
 None
PE3  A1001 (-4.5A)
PE3  A1001 ( 4.0A)
PE3  A1001 ( 4.1A)
PE3  A1001 (-4.8A)
PE3  A1001 ( 4.3A)
 1.09A 1epbA-1xwvA:
undetectable		 1epbA-1xwvA:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EPB_B_9CRB165_1
(EPIDIDYMAL RETINOIC
ACID-BINDING PROTEIN)		 1xwv DER F II
(Dermatophagoides
farinae) 		6 / 12 ILE A  29
LEU A  37
VAL A  65
ALA A  56
ILE A  54
ILE A  52
 None
PE3  A1001 (-4.5A)
PE3  A1001 ( 4.0A)
PE3  A1001 ( 4.1A)
PE3  A1001 (-4.8A)
PE3  A1001 ( 4.3A)
 1.12A 1epbB-1xwvA:
undetectable		 1epbB-1xwvA:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VHW_A_ADNA252_1
(PURINE NUCLEOSIDE
PHOSPHORYLASE)		 6all FE(3+)-CITRATE-BINDI
NG PROTEIN YFMC
(Bacillus
anthracis) 		5 / 11 ARG A 102
GLY A 304
VAL A  61
GLU A  59
ARG A 214
 None
None
None
None
PE3  A 401 (-2.9A)
 1.48A 1vhwA-6allA:
undetectable
1vhwD-6allA:
undetectable		 1vhwA-6allA:
21.80
1vhwD-6allA:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VHW_C_ADNC252_1
(PURINE NUCLEOSIDE
PHOSPHORYLASE)		 6all FE(3+)-CITRATE-BINDI
NG PROTEIN YFMC
(Bacillus
anthracis) 		5 / 11 ARG A 102
GLY A 304
VAL A  61
GLU A  59
ARG A 214
 None
None
None
None
PE3  A 401 (-2.9A)
 1.48A 1vhwC-6allA:
undetectable
1vhwE-6allA:
undetectable		 1vhwC-6allA:
21.80
1vhwE-6allA:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VHW_E_ADNE252_1
(PURINE NUCLEOSIDE
PHOSPHORYLASE)		 6all FE(3+)-CITRATE-BINDI
NG PROTEIN YFMC
(Bacillus
anthracis) 		5 / 11 ARG A 214
ARG A 102
GLY A 304
VAL A  61
GLU A  59
 PE3  A 401 (-2.9A)
None
None
None
None
 1.48A 1vhwC-6allA:
undetectable
1vhwE-6allA:
undetectable		 1vhwC-6allA:
21.80
1vhwE-6allA:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VHW_F_ADNF252_1
(PURINE NUCLEOSIDE
PHOSPHORYLASE)		 6all FE(3+)-CITRATE-BINDI
NG PROTEIN YFMC
(Bacillus
anthracis) 		5 / 10 ARG A 214
ARG A 102
GLY A 304
VAL A  61
GLU A  59
 PE3  A 401 (-2.9A)
None
None
None
None
 1.48A 1vhwB-6allA:
undetectable
1vhwF-6allA:
undetectable		 1vhwB-6allA:
21.80
1vhwF-6allA:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZD1_A_T27A557_1
(REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H)		 5dhd CHITINASE
(Thermococcus
kodakarensis) 		5 / 12 VAL A 680
VAL A 655
TYR A 709
TYR A 679
TYR A 641
 None
None
PE3  A 804 ( 3.9A)
PE3  A 804 (-3.8A)
None
 1.17A 2zd1A-5dhdA:
1.4		 2zd1A-5dhdA:
10.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DZG_A_NCAA302_0
(ADP-RIBOSYL CYCLASE
1)		 5dhd CHITINASE
(Thermococcus
kodakarensis) 		4 / 7 GLU A 640
ASP A 642
TRP A 669
SER A 667
 PE3  A 803 ( 4.6A)
PE3  A 803 (-3.4A)
None
None
 1.24A 3dzgA-5dhdA:
undetectable		 3dzgA-5dhdA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DZG_B_NCAB302_0
(ADP-RIBOSYL CYCLASE
1)		 5dhd CHITINASE
(Thermococcus
kodakarensis) 		4 / 7 GLU A 640
ASP A 642
TRP A 669
SER A 667
 PE3  A 803 ( 4.6A)
PE3  A 803 (-3.4A)
None
None
 1.24A 3dzgB-5dhdA:
undetectable		 3dzgB-5dhdA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3G8I_A_RO7A1_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR ALPHA)		 5cbk SHHTL5
(Striga
hermonthica) 		5 / 12 VAL A 139
CYH A 190
SER A 188
TYR A  62
MET A 154
 PE3  A 303 (-4.8A)
PE3  A 303 ( 4.1A)
None
None
None
 1.22A 3g8iA-5cbkA:
undetectable		 3g8iA-5cbkA:
23.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OHT_A_1N1A2000_1
(P38A)		 1xwv DER F II
(Dermatophagoides
farinae) 		5 / 12 ILE A  52
VAL A 104
ILE A 127
ILE A  68
TYR A  90
 PE3  A1001 ( 4.3A)
None
None
None
PE3  A1001 (-4.4A)
 1.23A 3ohtA-1xwvA:
undetectable
3ohtB-1xwvA:
undetectable		 3ohtA-1xwvA:
15.58
3ohtB-1xwvA:
15.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DXU_A_ACAA711_1
(LACTOTRANSFERRIN)		 5cbk SHHTL5
(Striga
hermonthica) 		4 / 6 GLY A 163
VAL A 162
GLY A 156
TYR A 157
 None
None
PE3  A 302 ( 3.8A)
None
 0.83A 4dxuA-5cbkA:
undetectable		 4dxuA-5cbkA:
19.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4G1Q_A_T27A601_1
(REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H)		 5dhd CHITINASE
(Thermococcus
kodakarensis) 		5 / 12 VAL A 680
VAL A 655
TYR A 709
TYR A 679
TYR A 641
 None
None
PE3  A 804 ( 3.9A)
PE3  A 804 (-3.8A)
None
 1.20A 4g1qA-5dhdA:
1.6		 4g1qA-5dhdA:
10.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IG3_A_T27A601_1
(REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H)		 5dhd CHITINASE
(Thermococcus
kodakarensis) 		5 / 12 VAL A 680
VAL A 655
TYR A 709
TYR A 679
TYR A 641
 None
None
PE3  A 804 ( 3.9A)
PE3  A 804 (-3.8A)
None
 1.22A 4ig3A-5dhdA:
undetectable		 4ig3A-5dhdA:
10.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MVM_A_PFLA511_1
(PROTON-GATED ION
CHANNEL)		 1xwv DER F II
(Dermatophagoides
farinae) 		4 / 8 ILE A 127
ALA A  98
ALA A  56
ILE A  63
 None
PE3  A1001 ( 3.7A)
PE3  A1001 ( 4.1A)
None
 0.65A 5mvmA-1xwvA:
undetectable
5mvmB-1xwvA:
undetectable		 5mvmA-1xwvA:
23.26
5mvmB-1xwvA:
23.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OSP_A_ACTA403_0
(CASEIN KINASE II
SUBUNIT ALPHA)		 1xwv DER F II
(Dermatophagoides
farinae) 		4 / 7 VAL A  65
ILE A  63
VAL A 106
ALA A  56
 PE3  A1001 ( 4.0A)
None
PE3  A1001 ( 4.7A)
PE3  A1001 ( 4.1A)
 0.65A 5ospA-1xwvA:
undetectable		 5ospA-1xwvA:
19.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OSR_A_ACTA402_0
(CASEIN KINASE II
SUBUNIT ALPHA)		 1xwv DER F II
(Dermatophagoides
farinae) 		4 / 7 VAL A  65
ILE A  63
VAL A 106
ALA A  56
 PE3  A1001 ( 4.0A)
None
PE3  A1001 ( 4.7A)
PE3  A1001 ( 4.1A)
 0.66A 5osrA-1xwvA:
undetectable		 5osrA-1xwvA:
19.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZJI_B_PQNB842_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2)		 1xwv DER F II
(Dermatophagoides
farinae) 		5 / 10 ILE A  68
ILE A  13
ALA A 118
LEU A 110
ALA A  50
 None
None
PE3  A1001 ( 4.7A)
PE3  A1001 ( 4.0A)
None
 1.37A 5zjiB-1xwvA:
undetectable		 5zjiB-1xwvA:
17.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6AWO_A_SREA701_1
(SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER)		 5jd4 LAE6
(uncultured
bacterium) 		5 / 9 ALA A  45
PHE A 289
GLY A 287
SER A  40
GLY A  43
 PE3  A 406 ( 4.0A)
None
None
None
None
 1.21A 6awoA-5jd4A:
undetectable		 6awoA-5jd4A:
20.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6AWQ_A_SREA701_1
(SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER)		 5jd4 LAE6
(uncultured
bacterium) 		5 / 9 ALA A  45
PHE A 289
GLY A 287
SER A  40
GLY A  43
 PE3  A 406 ( 4.0A)
None
None
None
None
 1.22A 6awqA-5jd4A:
undetectable		 6awqA-5jd4A:
20.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6CI6_A_NBOA607_1
(SERUM ALBUMIN)		 5jd4 LAE6
(uncultured
bacterium) 		4 / 7 ASP A 303
ALA A 307
LYS A 109
LEU A 106
 PE3  A 406 ( 4.6A)
None
None
None
 1.02A 6ci6A-5jd4A:
undetectable		 6ci6A-5jd4A:
13.42