SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'PAL'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1D4F_D_ADND604_2
(S-ADENOSYLHOMOCYSTEI
NE HYDROLASE)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 5 THR A 145
THR A 169
HIS A 135
HIS A 266
 None
PAL  A 385 ( 4.2A)
PAL  A 385 (-3.9A)
None
 1.41A 1d4fD-1ml4A:
3.2		 1d4fD-1ml4A:
23.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2E1Q_D_SALD5006_1
(XANTHINE
DEHYDROGENASE/OXIDAS
E)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 5 ARG A 107
PHE A  51
THR A  58
LEU A  60
 PAL  A 385 (-2.8A)
None
PAL  A 385 (-3.7A)
None
 1.39A 2e1qD-1ml4A:
undetectable		 2e1qD-1ml4A:
13.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3JWQ_D_VIAD901_1
(CGMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE
CATALYTIC DOMAIN,
CONE CGMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE
SUBUNIT ALPHA
CHIMERA)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		5 / 11 HIS A 135
LEU A 140
ALA A 114
PHE A  62
LEU A  47
 PAL  A 385 (-3.9A)
None
None
None
None
 1.46A 3jwqA-1ml4A:
undetectable
3jwqD-1ml4A:
undetectable		 3jwqA-1ml4A:
22.10
3jwqD-1ml4A:
22.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LVC_A_ADNA501_2
(S-ADENOSYL-L-HOMOCYS
TEINE HYDROLASE
(SAHASE))		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 5 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.39A 4lvcA-1ml4A:
4.8		 4lvcA-1ml4A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LVC_C_ADNC501_2
(S-ADENOSYL-L-HOMOCYS
TEINE HYDROLASE
(SAHASE))		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 5 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.38A 4lvcC-1ml4A:
2.2		 4lvcC-1ml4A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5M5K_A_ADNA502_2
(ADENOSYLHOMOCYSTEINA
SE)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 4 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.42A 5m5kA-1ml4A:
2.1		 5m5kA-1ml4A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5M5K_C_ADNC502_2
(ADENOSYLHOMOCYSTEINA
SE)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 4 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.40A 5m5kC-1ml4A:
4.8		 5m5kC-1ml4A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5M66_B_ADNB502_2
(ADENOSYLHOMOCYSTEINA
SE)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 4 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.42A 5m66B-1ml4A:
2.2		 5m66B-1ml4A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BTX_A_EDTA503_0
(SOLUTE CARRIER
FAMILY 39
(IRON-REGULATED
TRANSPORTER))		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 7 SER A  55
HIS A 135
GLY A 129
ARG A 297
 PAL  A 385 (-2.6A)
PAL  A 385 (-3.9A)
None
None
 1.10A 6btxA-1ml4A:
0.0		 6btxA-1ml4A:
24.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6F3M_B_ADNB502_2
(-)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 4 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.47A 6f3mB-1ml4A:
9.7		 6f3mB-1ml4A:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GBN_A_ADNA501_2
(-)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 5 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.39A 6gbnA-1ml4A:
6.2		 6gbnA-1ml4A:
22.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GBN_D_ADND501_2
(-)		 1ml4 ASPARTATE
TRANSCARBAMOYLASE
(Pyrococcus
abyssi) 		4 / 5 GLN A 138
THR A 137
THR A  49
LEU A  60
 PAL  A 385 (-4.7A)
None
None
None
 1.39A 6gbnD-1ml4A:
4.4		 6gbnD-1ml4A:
22.10