SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'OXD'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXM_A_IMNA2002_1
(SERUM ALBUMIN)
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
5 / 11 ILE A 195
PHE A 186
ARG A  60
GLY A 207
LYS A 206
None
None
OXD  A 543 (-4.1A)
None
MN  A 999 ( 2.4A)
1.29A 2bxmA-1ytmA:
undetectable
2bxmA-1ytmA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2F9W_A_PAUA6002_0
(PANTOTHENATE KINASE)
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
4 / 8 ARG A  60
THR A 198
GLY A 202
ILE A 195
OXD  A 543 (-4.1A)
None
None
None
0.78A 2f9wA-1ytmA:
undetectable
2f9wB-1ytmA:
undetectable
2f9wA-1ytmA:
20.85
2f9wB-1ytmA:
20.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QXS_A_RALA600_2
(ESTROGEN RECEPTOR)
4inf METAL-DEPENDENT
HYDROLASE

(Novosphingobium
aromaticivorans)
4 / 5 LEU A  47
ASP A  41
LEU A  66
HIS A 188
OXD  A 407 (-4.5A)
None
None
CA  A 401 (-3.5A)
1.25A 2qxsA-4infA:
undetectable
2qxsA-4infA:
22.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QXS_B_RALB600_2
(ESTROGEN RECEPTOR)
4inf METAL-DEPENDENT
HYDROLASE

(Novosphingobium
aromaticivorans)
4 / 5 LEU A  47
ASP A  41
LEU A  66
HIS A 188
OXD  A 407 (-4.5A)
None
None
CA  A 401 (-3.5A)
1.24A 2qxsB-4infA:
undetectable
2qxsB-4infA:
22.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2RK8_A_PPFA3969_1
(PHOSPHOENOLPYRUVATE
CARBOXYKINASE,
CYTOSOLIC [GTP])
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
7 / 8 ARG A  60
LYS A 205
LYS A 206
HIS A 225
SER A 244
ASP A 263
ARG A 327
OXD  A 543 (-4.1A)
OXD  A 543 ( 4.2A)
MN  A 999 ( 2.4A)
MN  A 999 (-3.4A)
OXD  A 543 ( 2.3A)
MN  A 999 (-2.5A)
ATP  A 541 ( 2.8A)
0.70A 2rk8A-1ytmA:
30.7
2rk8A-1ytmA:
23.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2RK8_B_PPFB3969_1
(PHOSPHOENOLPYRUVATE
CARBOXYKINASE,
CYTOSOLIC [GTP])
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
7 / 7 ARG A  60
LYS A 205
LYS A 206
HIS A 225
SER A 244
ASP A 263
ARG A 327
OXD  A 543 (-4.1A)
OXD  A 543 ( 4.2A)
MN  A 999 ( 2.4A)
MN  A 999 (-3.4A)
OXD  A 543 ( 2.3A)
MN  A 999 (-2.5A)
ATP  A 541 ( 2.8A)
0.73A 2rk8B-1ytmA:
29.2
2rk8B-1ytmA:
23.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VMY_A_FFOA505_1
(SERINE
HYDROXYMETHYLTRANSFE
RASE)
4inf METAL-DEPENDENT
HYDROLASE

(Novosphingobium
aromaticivorans)
5 / 12 LEU A  47
GLY A  49
ALA A  52
PRO A  92
GLY A  93
OXD  A 407 (-4.5A)
None
None
None
None
1.14A 2vmyB-4infA:
undetectable
2vmyB-4infA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2XF3_A_J01A600_1
(ORF12)
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
5 / 11 THR A 398
ALA A 406
GLY A 404
PHE A 407
ARG A  60
None
None
None
OXD  A 543 (-4.6A)
OXD  A 543 (-4.1A)
1.20A 2xf3A-1ytmA:
0.0
2xf3A-1ytmA:
22.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2XF3_B_J01B600_1
(ORF12)
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
5 / 11 THR A 398
ALA A 406
GLY A 404
PHE A 407
ARG A  60
None
None
None
OXD  A 543 (-4.6A)
OXD  A 543 (-4.1A)
1.18A 2xf3B-1ytmA:
0.0
2xf3B-1ytmA:
22.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2XH9_A_J01A1437_1
(ORF12)
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
5 / 11 THR A 398
ALA A 406
GLY A 404
PHE A 407
ARG A  60
None
None
None
OXD  A 543 (-4.6A)
OXD  A 543 (-4.1A)
1.20A 2xh9A-1ytmA:
undetectable
2xh9A-1ytmA:
22.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4K50_A_ACTA505_0
(RNA POLYMERASE
3D-POL)
1ytm PHOSPHOENOLPYRUVATE
CARBOXYKINASE [ATP]

(Anaerobiospirill
um
succiniciproduce
ns)
3 / 3 CYH A 118
ASN A 274
LYS A 205
None
None
OXD  A 543 ( 4.2A)
0.95A 4k50A-1ytmA:
undetectable
4k50A-1ytmA:
22.72