SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'NWN'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3D91_A_REMA350_1 (RENIN)	4u9i	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT (Desulfovibrio vulgaris)	5 / 12	GLY L 386 SER L 502 THR L 503 SER L 483 ALA L 477	None NWN L 601 (-2.7A) None None NWN L 601 (-3.4A)	1.10A	3d91A-4u9iL: undetectable	3d91A-4u9iL: 20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3UR0_C_SVRC516_1 (RNA-DEPENDENT RNA POLYMERASE)	4u9i	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT (Desulfovibrio vulgaris)	5 / 9	PRO L 478 GLY L 480 ALA L 477 ALA L 91 LEU L 116	NWN L 601 (-3.7A) None NWN L 601 (-3.4A) None None	1.38A	3ur0C-4u9iL: undetectable	3ur0C-4u9iL: 22.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4UAC_A_ACRA501_2 (CARBOHYDRATE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, CUT1 FAMILY (TC 3.A.1.1.-))	4u9i	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT (Desulfovibrio vulgaris)	4 / 7	PRO L 376 GLU L 337 SER L 502 THR S 18	None MG L 602 ( 3.9A) NWN L 601 (-2.7A) None	1.27A	4uacA-4u9iL: undetectable	4uacA-4u9iL: 23.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5OV9_B_CVIB602_0 (ACETYLCHOLINESTERASE)	4u9i	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT (Desulfovibrio vulgaris)	4 / 8	THR L 87 LEU L 90 THR L 236 VAL L 244	NWN L 601 ( 4.4A) None None None	1.25A	5ov9B-4u9iL: undetectable	5ov9B-4u9iL: 23.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	6GNG_B_QPSB601_2 (-)	4u9i	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT (Desulfovibrio vulgaris)	5 / 12	GLY L 480 GLY L 481 LEU L 482 GLY L 35 PRO L 376	None None NWN L 601 (-3.4A) None None	1.05A	6gngB-4u9iL: undetectable	6gngB-4u9iL: 22.62

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["3D91_A_REMA350_1","RENIN","4u9i","PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT","Desulfovibrio vulgaris",5,"GLY L 386;SER L 502;THR L 503;SER L 483;ALA L 477","None;NWN L 601 (-2.7A);None;None;NWN L 601 (-3.4A)","1.10A","3d91A-4u9iL:undetectable",null],["3UR0_C_SVRC516_1","RNA-DEPENDENT RNA POLYMERASE","4u9i","PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT","Desulfovibrio vulgaris",5,"PRO L 478;GLY L 480;ALA L 477;ALA L  91;LEU L 116","NWN L 601 (-3.7A);None;NWN L 601 (-3.4A);None;None","1.38A","3ur0C-4u9iL:undetectable","3d91A-4u9iL:20.65"],["4UAC_A_ACRA501_2","CARBOHYDRATE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, CUT1 FAMILY (TC 3.A.1.1.-)","4u9i","PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT;PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT","Desulfovibrio vulgaris",4,"PRO L 376;GLU L 337;SER L 502;THR S  18","None; MG L 602 ( 3.9A);NWN L 601 (-2.7A);None","1.27A","4uacA-4u9iL:undetectable","3ur0C-4u9iL:22.90"],["5OV9_B_CVIB602_0","ACETYLCHOLINESTERASE","4u9i","PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT","Desulfovibrio vulgaris",4,"THR L  87;LEU L  90;THR L 236;VAL L 244","NWN L 601 ( 4.4A);None;None;None","1.25A","5ov9B-4u9iL:undetectable","4uacA-4u9iL:23.06"],["6GNG_B_QPSB601_2","-","4u9i","PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT","Desulfovibrio vulgaris",5,"GLY L 480;GLY L 481;LEU L 482;GLY L  35;PRO L 376","None;None;NWN L 601 (-3.4A);None;None","1.05A","6gngB-4u9iL:undetectable","5ov9B-4u9iL:23.84"]]