SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'NVA'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BR4_D_SAMD301_1
(CEPHALOSPORIN
HYDROXYLASE CMCI)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
3 / 3 LYS A 290
ASP A 347
ASP A 326
None
NVA  A1818 (-3.1A)
None
0.90A 2br4D-1obhA:
undetectable
2br4D-1obhA:
14.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BTE_A_LEUA1894_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
7 / 8 MET A  40
TYR A  43
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.50A 2bteA-1obhA:
38.5
2bteA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BTE_D_LEUD1893_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
7 / 8 MET A  40
TYR A  43
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.48A 2bteD-1obhA:
38.9
2bteD-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BYT_A_LEUA1301_0
(LEUCYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 7 MET A  40
TYR A  43
ASP A  80
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
NVA  A1816 (-3.5A)
0.35A 2bytA-1obhA:
38.6
2bytA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BYT_D_LEUD1601_0
(LEUCYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 7 MET A  40
TYR A  43
ASP A  80
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
NVA  A1816 (-3.5A)
0.35A 2bytD-1obhA:
38.6
2bytD-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2V0G_A_LEUA1887_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 8 MET A  40
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.61A 2v0gA-1obhA:
51.8
2v0gA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2V0G_A_LEUA1887_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 8 MET A  40
TYR A  43
ASP A  80
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
NVA  A1816 (-3.5A)
0.41A 2v0gA-1obhA:
51.8
2v0gA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2V0G_D_LEUD1883_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
4 / 5 TYR A  43
ASP A  80
TYR A 507
TYR A 535
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
0.34A 2v0gD-1obhA:
37.2
2v0gD-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4AQ7_A_LEUA902_0
(LEUCINE--TRNA LIGASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
4 / 7 MET A  40
ASP A  80
SER A 504
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
NVA  A1816 (-3.5A)
0.42A 4aq7A-1obhA:
33.7
4aq7A-1obhA:
45.70
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4AQ7_D_LEUD902_0
(LEUCINE--TRNA LIGASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 9 MET A  40
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.38A 4aq7D-1obhA:
45.4
4aq7D-1obhA:
45.70
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4ARC_A_LEUA1001_0
(LEUCINE--TRNA LIGASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
5 / 7 TYR A  43
ASP A  80
SER A 504
TYR A 535
HIS A 545
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
NVA  A1816 (-3.5A)
0.30A 4arcA-1obhA:
45.5
4arcA-1obhA:
45.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HWA_A_GCSA302_1
(CHITOSANASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
4 / 7 THR A 127
ASP A 503
GLY A  83
TYR A  43
None
None
None
NVA  A1816 ( 3.5A)
0.97A 5hwaA-1obhA:
undetectable
5hwaA-1obhA:
15.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KOC_B_SAMB401_0
(PAVINE
N-METHYLTRANSFERASE)
4nf2 ORNITHINE
CARBAMOYLTRANSFERASE

(Bacillus
anthracis)
5 / 12 SER A 234
GLY A 162
GLY A 164
THR A 186
VAL A 231
NVA  A 402 ( 2.8A)
None
None
None
None
1.13A 5kocB-4nf2A:
undetectable
5kocB-4nf2A:
23.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GNG_A_QPSA601_1
(-)
4nf2 ORNITHINE
CARBAMOYLTRANSFERASE

(Bacillus
anthracis)
5 / 12 LEU A 171
VAL A 167
THR A 207
GLY A 208
ASN A 165
None
None
None
None
NVA  A 402 (-3.8A)
1.18A 6gngA-4nf2A:
2.1
6gngA-4nf2A:
21.26