SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'NO2'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1IGX_A_EPAA700_1
(PROSTAGLANDIN
ENDOPEROXIDE H
SYNTHASE-1)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		5 / 12 PHE A  49
LEU A 407
GLY A 414
ALA A 412
GLY A 144
 NO2  A 501 (-4.8A)
None
None
None
None
 1.08A 1igxA-4jreA:
undetectable		 1igxA-4jreA:
20.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE1_A_CUA502_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)		 1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1
(Neisseria
gonorrhoeae) 		3 / 3 ASP A  97
HIS A  99
HIS A 134
 NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
 0.14A 1oe1A-1kbvA:
41.3		 1oe1A-1kbvA:
38.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE3_A_CUA502_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)		 1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1
(Neisseria
gonorrhoeae) 		3 / 3 ASP A  97
HIS A  99
HIS A 134
 NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
 0.15A 1oe3A-1kbvA:
40.9		 1oe3A-1kbvA:
38.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V0M_D_KLND1499_1
(CYTOCHROME P450 3A4)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		4 / 5 PHE A 370
PHE A 270
PHE A 147
ILE A 421
 None
None
NO2  A 501 (-3.3A)
GYP  A 502 (-4.6A)
 1.30A 2v0mD-4jreA:
undetectable		 2v0mD-4jreA:
22.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2WD9_C_IBPC1570_1
(ACYL-COENZYME A
SYNTHETASE ACSM2A,
MITOCHONDRIAL)		 2xzi EXTRACELLULAR
SIALIDASE/NEURAMINID
ASE, PUTATIVE
(Aspergillus
fumigatus) 		5 / 10 ILE A 228
LEU A 218
VAL A 128
GLY A 210
ARG A 262
 NO2  A 505 ( 4.6A)
None
None
None
None
 1.27A 2wd9C-2xziA:
undetectable		 2wd9C-2xziA:
20.34
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2XXG_A_CUA1338_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)		 1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1
(Neisseria
gonorrhoeae) 		3 / 3 ASP A  97
HIS A  99
HIS A 134
 NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
 0.12A 2xxgA-1kbvA:
41.1		 2xxgA-1kbvA:
38.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2XXG_C_CUC1339_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)		 1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1
(Neisseria
gonorrhoeae) 		3 / 3 ASP A  97
HIS A  99
HIS A 134
 NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
 0.08A 2xxgC-1kbvA:
41.1		 2xxgC-1kbvA:
38.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DH0_A_SAMA220_0
(SAM DEPENDENT
METHYLTRANSFERASE)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		5 / 12 PHE A 267
GLY A 365
GLY A 363
PHE A 359
SER A 312
 NO2  A 501 (-3.4A)
None
None
None
None
 1.21A 3dh0A-4jreA:
undetectable		 3dh0A-4jreA:
19.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3FRQ_B_ERYB195_1
(REPRESSOR PROTEIN
MPHR(A))		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		4 / 7 ASN A 263
ARG A 267
ASN A 242
ALA A 239
 None
NO2  A 403 (-3.7A)
None
None
 1.33A 3frqB-5tr7A:
0.8		 3frqB-5tr7A:
25.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3MNP_A_DEXA784_1
(GLUCOCORTICOID
RECEPTOR)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		5 / 12 ASN A 175
GLY A 172
MET A 151
LEU A 407
PHE A  49
 NO2  A 501 ( 4.4A)
None
None
None
NO2  A 501 (-4.8A)
 1.38A 3mnpA-4jreA:
undetectable		 3mnpA-4jreA:
19.96
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3MZE_A_CFXA364_1
(D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
DACA)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		6 / 12 ALA A  65
LYS A  69
THR A 233
GLY A 234
THR A 236
ARG A 267
 None
None
None
None
None
NO2  A 403 (-3.7A)
 1.28A 3mzeA-5tr7A:
41.3		 3mzeA-5tr7A:
58.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3MZE_A_CFXA364_1
(D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
DACA)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		8 / 12 ALA A  65
SER A  66
LYS A  69
ASN A 131
LEU A 172
THR A 233
GLY A 234
ARG A 267
 None
None
None
None
None
None
None
NO2  A 403 (-3.7A)
 0.76A 3mzeA-5tr7A:
41.3		 3mzeA-5tr7A:
58.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NY4_A_SMXA308_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		6 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
THR A 233
GLY A 234
 None
None
NO2  A 403 (-3.7A)
None
None
None
 0.85A 3ny4A-5tr7A:
21.7		 3ny4A-5tr7A:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4G19_D_ACTD302_0
(GLUTATHIONE
TRANSFERASE GTE1)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		3 / 3 TYR A 263
PHE A  49
ARG A 305
 NO2  A 501 (-4.6A)
NO2  A 501 (-4.8A)
NO2  A 501 (-3.8A)
 1.21A 4g19D-4jreA:
undetectable		 4g19D-4jreA:
18.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4J4V_B_SVRB301_1
(NUCLEOCAPSID PROTEIN)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		5 / 10 ARG A 305
ALA A 302
VAL A 178
GLN A 182
PRO A  81
 NO2  A 501 (-3.8A)
None
None
None
None
 1.18A 4j4vB-4jreA:
undetectable		 4j4vB-4jreA:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KHP_A_PARA1606_1
(16S RIBOSOMAL RNA
30S RIBOSOMAL
PROTEIN S9
30S RIBOSOMAL
PROTEIN S10)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		3 / 3 TYR A 263
ARG A  89
SER A 411
 NO2  A 501 (-4.6A)
NO2  A 501 (-2.8A)
NO2  A 501 (-4.5A)
 0.95A 4khpI-4jreA:
undetectable
4khpJ-4jreA:
undetectable		 4khpI-4jreA:
13.82
4khpJ-4jreA:
10.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4U9U_B_ACTB1502_0
(NA(+)-TRANSLOCATING
NADH-QUINONE
REDUCTASE SUBUNIT F)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		4 / 5 ARG A  89
GLY A 144
ALA A 145
GLY A 141
 NO2  A 501 (-2.8A)
None
None
None
 0.93A 4u9uB-4jreA:
undetectable		 4u9uB-4jreA:
18.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6AWP_A_FVXA701_1
(SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER)		 4jre NITRITE EXTRUSION
PROTEIN 1
(Escherichia
coli) 		5 / 9 ASN A 175
ILE A 373
SER A 366
SER A 368
THR A 403
 NO2  A 501 ( 4.4A)
None
None
None
None
 1.47A 6awpA-4jreA:
undetectable		 6awpA-4jreA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6B68_D_9F2D400_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		6 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
GLY A 234
GLU A 264
 None
None
NO2  A 403 (-3.7A)
None
None
NO2  A 403 (-4.2A)
 0.83A 6b68D-5tr7A:
21.9		 6b68D-5tr7A:
13.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6B69_D_9F2D301_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		7 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
THR A 233
GLY A 234
GLU A 264
 None
None
NO2  A 403 (-3.7A)
None
None
None
NO2  A 403 (-4.2A)
 0.79A 6b69D-5tr7A:
21.9		 6b69D-5tr7A:
13.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6B6A_B_9F2B301_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		6 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
THR A 233
GLY A 234
 None
None
NO2  A 403 (-3.7A)
None
None
None
 0.73A 6b6aB-5tr7A:
21.9		 6b6aB-5tr7A:
13.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6B6A_D_9F2D301_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		7 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
THR A 233
GLY A 234
GLU A 264
 None
None
NO2  A 403 (-3.7A)
None
None
None
NO2  A 403 (-4.2A)
 0.79A 6b6aD-5tr7A:
21.9		 6b6aD-5tr7A:
13.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6B6C_A_9F2A301_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		6 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
THR A 233
GLY A 234
 None
None
NO2  A 403 (-3.7A)
None
None
None
 0.70A 6b6cA-5tr7A:
22.1		 6b6cA-5tr7A:
13.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6B6E_A_9F2A302_1
(BETA-LACTAMASE)		 5tr7 D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE
(Vibrio
cholerae) 		6 / 12 SER A  66
SER A 129
ARG A 267
LYS A 232
THR A 233
GLY A 234
 None
None
NO2  A 403 (-3.7A)
None
None
None
 0.79A 6b6eA-5tr7A:
22.0		 6b6eA-5tr7A:
13.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BRD_C_RFPC502_1
(RIFAMPIN
MONOOXYGENASE)		 2xzi EXTRACELLULAR
SIALIDASE/NEURAMINID
ASE, PUTATIVE
(Aspergillus
fumigatus) 		5 / 12 ARG A 230
GLY A 229
VAL A 219
THR A 278
GLY A 281
 NO2  A 505 (-3.1A)
None
None
GOL  A 503 (-4.1A)
None
 1.14A 6brdC-2xziA:
undetectable		 6brdC-2xziA:
12.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6C2M_D_SUED1202_1
(NS3 PROTEASE)		 2e80 CYTOCHROME C-552
(Wolinella
succinogenes) 		4 / 9 HIS A 277
ASP A 279
LEU A 319
SER A 325
 NO2  A 704 ( 3.6A)
HEM  A1511 ( 4.0A)
HEM  A1511 (-4.6A)
None
 0.84A 6c2mD-2e80A:
undetectable		 6c2mD-2e80A:
11.64