SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'LMS'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1C9S_N_TRPN81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 10 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.15A 1c9sN-4injA:
undetectable
1c9sO-4injA:
undetectable
1c9sN-4injA:
10.80
1c9sO-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1C9S_P_TRPP81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 11 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.13A 1c9sP-4injA:
undetectable
1c9sQ-4injA:
undetectable
1c9sP-4injA:
10.80
1c9sQ-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1C9S_V_TRPV81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 10 GLY A  85
SER A  88
GLY A 109
HIS A 133
THR A  81
LMS  A 401 ( 4.7A)
None
None
LMS  A 401 (-3.9A)
None
1.15A 1c9sL-4injA:
undetectable
1c9sV-4injA:
undetectable
1c9sL-4injA:
10.80
1c9sV-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTF_Q_TRPQ81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN
(TRAP))
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 11 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.13A 1gtfQ-4injA:
undetectable
1gtfR-4injA:
undetectable
1gtfQ-4injA:
10.80
1gtfR-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTF_S_TRPS81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN
(TRAP))
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 11 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.12A 1gtfS-4injA:
undetectable
1gtfT-4injA:
undetectable
1gtfS-4injA:
10.80
1gtfT-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_T_TRPT81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 11 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.08A 1gtnT-4injA:
undetectable
1gtnU-4injA:
undetectable
1gtnT-4injA:
10.80
1gtnU-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_V_TRPV81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 12 GLY A  85
SER A  88
GLY A 109
HIS A 133
THR A  81
LMS  A 401 ( 4.7A)
None
None
LMS  A 401 (-3.9A)
None
1.04A 1gtnL-4injA:
undetectable
1gtnV-4injA:
undetectable
1gtnL-4injA:
10.80
1gtnV-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1PG2_A_ADNA552_1
(METHIONYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
5 / 11 HIS A  49
GLY A  51
HIS A  52
GLY A 537
VAL A 577
SO4  A1506 (-4.2A)
LMS  A1817 (-3.5A)
LMS  A1817 ( 4.3A)
LMS  A1817 ( 3.7A)
LMS  A1817 (-4.0A)
0.82A 1pg2A-1obhA:
27.7
1pg2A-1obhA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1PG2_A_ADNA552_1
(METHIONYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
5 / 11 HIS A  49
GLY A  51
HIS A  52
GLY A 538
VAL A 577
SO4  A1506 (-4.2A)
LMS  A1817 (-3.5A)
LMS  A1817 ( 4.3A)
LMS  A1817 ( 4.1A)
LMS  A1817 (-4.0A)
0.56A 1pg2A-1obhA:
27.7
1pg2A-1obhA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UTD_S_TRPS81_0
(TRANSCRIPTION
ATTENUATION PROTEIN
MTRB)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 11 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.10A 1utdS-4injA:
undetectable
1utdT-4injA:
undetectable
1utdS-4injA:
10.80
1utdT-4injA:
10.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UTD_U_TRPU81_0
(TRANSCRIPTION
ATTENUATION PROTEIN
MTRB)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 10 GLY A 109
HIS A 133
THR A  81
GLY A  85
SER A  88
None
LMS  A 401 (-3.9A)
None
LMS  A 401 ( 4.7A)
None
1.12A 1utdU-4injA:
undetectable
1utdV-4injA:
undetectable
1utdU-4injA:
10.80
1utdV-4injA:
10.80
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BTE_A_LEUA1894_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
7 / 8 MET A  40
TYR A  43
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.50A 2bteA-1obhA:
38.5
2bteA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BTE_D_LEUD1893_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
7 / 8 MET A  40
TYR A  43
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.48A 2bteD-1obhA:
38.9
2bteD-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BYT_A_LEUA1301_0
(LEUCYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 7 MET A  40
TYR A  43
ASP A  80
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
NVA  A1816 (-3.5A)
0.35A 2bytA-1obhA:
38.6
2bytA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2BYT_D_LEUD1601_0
(LEUCYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 7 MET A  40
TYR A  43
ASP A  80
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
NVA  A1816 (-3.5A)
0.35A 2bytD-1obhA:
38.6
2bytD-1obhA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HA4_A_ACTA544_0
(ACETYLCHOLINESTERASE)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
4 / 8 GLY A  84
GLY A  85
ALA A 111
HIS A 296
LMS  A 401 (-3.3A)
LMS  A 401 ( 4.7A)
LMS  A 401 (-3.4A)
LMS  A 401 (-4.3A)
0.59A 2ha4A-4injA:
3.6
2ha4A-4injA:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HA4_B_ACTB601_0
(ACETYLCHOLINESTERASE)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
4 / 7 GLY A  84
GLY A  85
ALA A 111
HIS A 296
LMS  A 401 (-3.3A)
LMS  A 401 ( 4.7A)
LMS  A 401 (-3.4A)
LMS  A 401 (-4.3A)
0.60A 2ha4B-4injA:
2.3
2ha4B-4injA:
20.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2V0G_A_LEUA1887_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 8 MET A  40
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.61A 2v0gA-1obhA:
51.8
2v0gA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2V0G_A_LEUA1887_0
(AMINOACYL-TRNA
SYNTHETASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 8 MET A  40
TYR A  43
ASP A  80
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 ( 3.5A)
NVA  A1816 (-3.9A)
None
None
NVA  A1816 (-3.5A)
0.41A 2v0gA-1obhA:
51.8
2v0gA-1obhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4AQ7_A_LEUA902_0
(LEUCINE--TRNA LIGASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
4 / 7 MET A  40
ASP A  80
SER A 504
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
NVA  A1816 (-3.5A)
0.42A 4aq7A-1obhA:
33.7
4aq7A-1obhA:
45.70
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4AQ7_D_LEUD902_0
(LEUCINE--TRNA LIGASE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
6 / 9 MET A  40
ASP A  80
SER A 504
TYR A 507
TYR A 535
HIS A 545
LMS  A1817 ( 3.7A)
NVA  A1816 (-3.9A)
NVA  A1816 ( 4.8A)
None
None
NVA  A1816 (-3.5A)
0.38A 4aq7D-1obhA:
45.4
4aq7D-1obhA:
45.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FAK_A_SAMA201_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE H)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
5 / 10 ILE A 536
GLY A 537
GLY A 538
PHE A 741
MET A  58
None
LMS  A1817 ( 3.7A)
LMS  A1817 ( 4.1A)
None
None
1.02A 4fakA-1obhA:
undetectable
4fakA-1obhA:
10.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QCK_A_ASDA404_1
(3-KETOSTEROID-9-ALPH
A-MONOOXYGENASE
OXYGENASE SUBUNIT)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
5 / 12 HIS A 133
LEU A 107
ALA A 115
ASN A 204
GLY A 131
LMS  A 401 (-3.9A)
None
None
None
None
1.22A 4qckA-4injA:
undetectable
4qckA-4injA:
22.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QOI_A_ML1A303_1
(RIBOSYLDIHYDRONICOTI
NAMIDE DEHYDROGENASE
[QUINONE])
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
4 / 8 PHE A 231
GLY A  85
ASN A 204
ILE A  83
None
LMS  A 401 ( 4.7A)
None
LMS  A 401 (-4.2A)
0.86A 4qoiA-4injA:
4.5
4qoiB-4injA:
4.3
4qoiA-4injA:
23.34
4qoiB-4injA:
23.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GQI_A_ACTA604_0
(CYCLOHEXANONE
MONOOXYGENASE FROM
THERMOCRISPUM
MUNICIPALE)
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus)
4 / 6 PRO A  42
ILE A 105
GLY A  78
GLU A 124
LMS  A1817 (-4.1A)
None
None
None
0.93A 6gqiA-1obhA:
undetectable
6gqiA-1obhA:
22.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HU9_E_PCFE202_0
(CYTOCHROME C OXIDASE
POLYPEPTIDE 5A,
MITOCHONDRIAL
CYTOCHROME C OXIDASE
SUBUNIT 1)
4inj LMO1638 PROTEIN
(Listeria
monocytogenes)
4 / 8 GLN A 298
ILE A  83
ALA A 111
ASP A 170
None
LMS  A 401 (-4.2A)
LMS  A 401 (-3.4A)
None
1.05A 6hu9a-4injA:
undetectable
6hu9e-4injA:
undetectable
6hu9a-4injA:
18.68
6hu9e-4injA:
16.77