SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'LMG'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1LQT_B_ACTB1868_0
(FPRA)
5oy0 PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2

(Synechocystis
sp.
PCC
6803)
3 / 3 ALA b 708
HIS b 709
VAL b 712
CLA  b1842 ( 3.9A)
CLA  b1842 (-3.9A)
LMG  b1851 (-4.5A)
0.37A 1lqtB-5oy0b:
undetectable
1lqtB-5oy0b:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1LQU_B_ACTB1425_0
(FPRA)
5oy0 PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2

(Synechocystis
sp.
PCC
6803)
3 / 3 ALA b 708
HIS b 709
VAL b 712
CLA  b1842 ( 3.9A)
CLA  b1842 (-3.9A)
LMG  b1851 (-4.5A)
0.38A 1lquB-5oy0b:
undetectable
1lquB-5oy0b:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V0M_D_KLND1499_1
(CYTOCHROME P450 3A4)
1q90 CYTOCHROME B6
CYTOCHROME B6-F
COMPLEX SUBUNIT 4
CYTOCHROME B6F
COMPLEX SUBUNIT PETG

(Chlamydomonas
reinhardtii)
4 / 5 PHE G  22
PHE B 110
PHE D 133
ILE D 117
LMG  D 953 (-3.8A)
None
None
None
1.39A 2v0mD-1q90G:
undetectable
2v0mD-1q90G:
7.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CLD_A_GW6A1_2
(GLUCOCORTICOID
RECEPTOR)
1q90 CYTOCHROME B6
CYTOCHROME B6-F
COMPLEX SUBUNIT 4

(Chlamydomonas
reinhardtii)
5 / 9 LEU D  54
LEU D  57
TRP B  80
ALA D  60
MET B  92
LMG  L 951 (-4.5A)
None
None
None
LMG  L 951 (-3.8A)
1.50A 3cldA-1q90D:
0.1
3cldA-1q90D:
22.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LW5_B_PQNB5002_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2)
5oy0 PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2

(Synechocystis
sp.
PCC
6803)
9 / 10 ILE b  25
MET b 659
PHE b 660
SER b 663
ARG b 665
TRP b 668
ALA b 696
LEU b 697
ALA b 702
LMG  b1851 ( 4.9A)
CLA  b1807 ( 3.2A)
PQN  b1844 ( 4.2A)
PQN  b1844 (-3.7A)
None
PQN  b1844 ( 3.4A)
PQN  b1844 (-3.2A)
PQN  b1844 ( 3.8A)
PQN  b1844 (-3.1A)
0.81A 3lw5B-5oy0b:
12.1
3lw5B-5oy0b:
10.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WNU_A_QDNA602_1
(CYTOCHROME P450 2D6)
4il6 PHOTOSYSTEM Q(B)
PROTEIN

(Thermosynechococ
cus
vulcanus)
5 / 11 GLY A 171
PHE A 158
LEU A 120
ALA A 154
PHE A 186
None
PHO  A1007 ( 4.9A)
LMG  A1012 ( 4.1A)
CLA  A1005 ( 4.3A)
CLA  A1005 (-4.0A)
1.17A 4wnuA-4il6A:
undetectable
4wnuA-4il6A:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZE1_A_X2NA602_1
(LANOSTEROL 14-ALPHA
DEMETHYLASE)
1q90 CYTOCHROME B6
CYTOCHROME B6F
COMPLEX SUBUNIT PETG
CYTOCHROME B6F
COMPLEX SUBUNIT PETL
CYTOCHROME B6F
COMPLEX SUBUNIT PETM

(Chlamydomonas
reinhardtii)
5 / 12 TYR L   7
PHE B  33
GLY G  20
LEU M  78
THR M  72
LMG  L 951 (-3.4A)
BCR  B 904 (-4.5A)
BCR  B 904 (-3.4A)
None
LMG  L 951 (-3.8A)
1.18A 4ze1A-1q90L:
undetectable
4ze1A-1q90L:
5.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EQB_A_1YNA602_1
(LANOSTEROL 14-ALPHA
DEMETHYLASE)
5xnm PHOTOSYSTEM II CP47
REACTION CENTER
PROTEIN

(Pisum
sativum)
5 / 12 GLY B 154
ILE B 265
GLY B 173
GLY B 176
THR B 159
None
None
None
None
LMG  B2633 (-4.2A)
1.11A 5eqbA-5xnmB:
undetectable
5eqbA-5xnmB:
20.61
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ZGB_B_PQNB844_1
(PSAB)
5oy0 PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2

(Synechocystis
sp.
PCC
6803)
5 / 9 ILE b  25
MET b 659
TRP b 664
LEU b 697
ALA b 702
LMG  b1851 ( 4.9A)
CLA  b1807 ( 3.2A)
None
PQN  b1844 ( 3.8A)
PQN  b1844 (-3.1A)
1.43A 5zgbB-5oy0b:
42.3
5zgbB-5oy0b:
89.74
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ZJI_B_PQNB842_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2)
5oy0 PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2

(Synechocystis
sp.
PCC
6803)
10 / 10 TRP b  22
ILE b  25
MET b 659
TRP b 664
ARG b 665
TRP b 668
ILE b 672
ALA b 696
LEU b 697
ALA b 702
CLA  b1841 ( 4.0A)
LMG  b1851 ( 4.9A)
CLA  b1807 ( 3.2A)
None
None
PQN  b1844 ( 3.4A)
CLA  b1841 (-4.6A)
PQN  b1844 (-3.2A)
PQN  b1844 ( 3.8A)
PQN  b1844 (-3.1A)
0.37A 5zjiB-5oy0b:
44.3
5zjiB-5oy0b:
78.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DWN_C_AQ4C602_1
(CYTOCHROME P450 1A1)
5oy0 PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2

(Synechocystis
sp.
PCC
6803)
3 / 3 SER b 484
SER b 481
ALA b 463
None
LMG  b1855 (-2.8A)
None
0.69A 6dwnC-5oy0b:
undetectable
6dwnC-5oy0b:
14.46