SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'LDA'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_K_TRPK81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)
2gsk VITAMIN B12
TRANSPORTER BTUB

(Escherichia
coli)
4 / 7 THR A  40
SER A  60
GLY A 145
THR A 175
None
None
LDA  A 803 (-4.2A)
None
0.96A 1gtnJ-2gskA:
undetectable
1gtnK-2gskA:
undetectable
1gtnJ-2gskA:
7.94
1gtnK-2gskA:
7.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1P6K_B_ACTB861_0
(NITRIC-OXIDE
SYNTHASE, BRAIN)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 5 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.21A 1p6kB-3t6dM:
undetectable
1p6kB-3t6dM:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RQP_A_SAMA500_1
(5'-FLUORO-5'-DEOXYAD
ENOSINE SYNTHASE)
5mlz DOLICHOL
MONOPHOSPHATE
MANNOSE SYNTHASE

(Pyrococcus
furiosus)
4 / 7 PHE A 237
ASN A 281
PHE A 301
SER A 273
CL  A 403 ( 4.8A)
None
CL  A 403 (-4.6A)
LDA  A 408 (-3.4A)
1.48A 1rqpB-5mlzA:
2.2
1rqpB-5mlzA:
23.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RS6_B_ACTB861_0
(NITRIC-OXIDE
SYNTHASE, BRAIN)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 5 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.22A 1rs6B-3t6dM:
0.7
1rs6B-3t6dM:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RS7_A_ACTA860_0
(NITRIC-OXIDE
SYNTHASE, BRAIN)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 5 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.25A 1rs7A-3t6dM:
undetectable
1rs7A-3t6dM:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1YA4_A_CTXA11_1
(CES1 PROTEIN)
1xkw FE(III)-PYOCHELIN
RECEPTOR

(Pseudomonas
aeruginosa)
4 / 8 LEU A 536
GLY A 583
LEU A 538
PRO A  76
LDA  A2002 (-4.9A)
None
LDA  A2001 ( 4.5A)
None
0.94A 1ya4A-1xkwA:
undetectable
1ya4A-1xkwA:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ZZU_B_ACTB861_0
(NITRIC-OXIDE
SYNTHASE, BRAIN)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 5 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.21A 1zzuB-3t6dM:
0.7
1zzuB-3t6dM:
20.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VCT_B_ASDB1223_1
(GLUTATHIONE
S-TRANSFERASE A2)
1ar1 CYTOCHROME C OXIDASE
(Paracoccus
denitrificans)
4 / 8 ILE B  92
GLY B  93
LEU B  97
LEU B 100
None
LDA  B 274 ( 4.4A)
LDA  B 274 ( 4.4A)
None
0.87A 2vctB-1ar1B:
0.0
2vctB-1ar1B:
21.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N62_A_ACTA860_0
(NITRIC OXIDE
SYNTHASE)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 4 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.23A 3n62A-3t6dM:
0.2
3n62A-3t6dM:
20.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N65_A_ACTA860_0
(NITRIC OXIDE
SYNTHASE)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 4 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.23A 3n65A-3t6dM:
undetectable
3n65A-3t6dM:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N66_A_ACTA860_0
(NITRIC OXIDE
SYNTHASE)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 4 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.24A 3n66A-3t6dM:
0.1
3n66A-3t6dM:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NVK_I_SAMI228_0
(FIBRILLARIN-LIKE
RRNA/TRNA
2'-O-METHYLTRANSFERA
SE)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 GLY A 219
ALA A 231
THR A 105
ILE A 188
VAL A 218
LDA  A1372 (-3.5A)
LDA  A1373 ( 3.9A)
None
LDA  A1346 ( 4.1A)
LDA  A1372 (-4.1A)
1.14A 3nvkI-4d65A:
undetectable
3nvkI-4d65A:
20.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OU6_A_SAMA300_0
(SAM-DEPENDENT
METHYLTRANSFERASE)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 GLY A 191
GLY A 175
SER A 193
LEU A 149
ALA A 179
LDA  A1370 ( 4.6A)
LDA  A1383 ( 4.2A)
None
LDA  A1365 ( 4.3A)
None
1.03A 3ou6A-4d65A:
undetectable
3ou6A-4d65A:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OU6_B_SAMB300_0
(SAM-DEPENDENT
METHYLTRANSFERASE)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 GLY A 191
GLY A 175
SER A 193
LEU A 149
ALA A 179
LDA  A1370 ( 4.6A)
LDA  A1383 ( 4.2A)
None
LDA  A1365 ( 4.3A)
None
1.04A 3ou6B-4d65A:
undetectable
3ou6B-4d65A:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OU7_B_SAMB300_0
(SAM-DEPENDENT
METHYLTRANSFERASE)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 GLY A 191
GLY A 175
SER A 193
LEU A 149
ALA A 179
LDA  A1370 ( 4.6A)
LDA  A1383 ( 4.2A)
None
LDA  A1365 ( 4.3A)
None
1.06A 3ou7B-4d65A:
undetectable
3ou7B-4d65A:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UQ6_B_ADNB401_2
(ADENOSINE KINASE,
PUTATIVE)
5mlz DOLICHOL
MONOPHOSPHATE
MANNOSE SYNTHASE

(Pyrococcus
furiosus)
4 / 5 LEU A 242
GLY A 244
PHE A 338
ASN A 281
None
LDA  A 408 (-4.6A)
None
None
1.20A 3uq6B-5mlzA:
undetectable
3uq6B-5mlzA:
24.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V4T_C_ACTC502_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)
2i2q COFILIN
(Schizosaccharomy
ces
pombe)
3 / 3 PRO A  88
ASP A 121
GLU A  59
None
LDA  A 900 (-3.6A)
None
0.79A 3v4tC-2i2qA:
undetectable
3v4tC-2i2qA:
15.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3VYW_A_SAMA501_0
(MNMC2)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 TYR A 233
GLY A 234
ASN A 102
ALA A 251
LEU A 291
LDA  A1372 (-4.3A)
None
None
None
None
1.02A 3vywA-4d65A:
undetectable
3vywA-4d65A:
19.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3VYW_B_SAMB401_0
(MNMC2)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 TYR A 233
GLY A 234
ASN A 102
ALA A 251
LEU A 291
LDA  A1372 (-4.3A)
None
None
None
None
1.05A 3vywB-4d65A:
undetectable
3vywB-4d65A:
19.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3VYW_D_SAMD401_0
(MNMC2)
4d65 PORIN 2
(Providencia
stuartii)
5 / 12 TYR A 233
GLY A 234
ASN A 102
ALA A 251
LEU A 291
LDA  A1372 (-4.3A)
None
None
None
None
0.98A 3vywD-4d65A:
undetectable
3vywD-4d65A:
19.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ZS3_A_ACTA1224_0
(THAUMATIN-LIKE
PROTEIN)
5o67 FAPF
(Pseudomonas
sp.
UK4)
4 / 5 SER B 196
GLU B 176
THR B 178
ASP B 148
None
LDA  B 502 ( 4.9A)
None
LDA  B 502 (-4.1A)
1.09A 3zs3A-5o67B:
undetectable
3zs3A-5o67B:
20.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EJJ_A_NCTA501_1
(CYTOCHROME P450 2A6)
4mrp ABC TRANSPORTER
RELATED PROTEIN

(Novosphingobium
aromaticivorans)
4 / 7 PHE A  23
GLY A 109
THR A 113
ILE A 151
None
None
None
LDA  A 701 ( 4.7A)
0.81A 4ejjA-4mrpA:
undetectable
4ejjA-4mrpA:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FGZ_B_CQAB301_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE)
3zuy TRANSPORTER
(Neisseria
meningitidis)
4 / 8 GLY A  45
GLY A  50
LEU A 195
VAL A 198
LDA  A1316 ( 3.8A)
None
None
None
0.92A 4fgzB-3zuyA:
undetectable
4fgzB-3zuyA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4L1A_A_AB1A101_2
(MDR769 HIV-1
PROTEASE)
4zgv FERREDOXIN RECEPTOR
(Pectobacterium
atrosepticum)
4 / 6 ASN A 135
ASP A 131
GLY A 315
THR A 365
None
None
LDA  A 901 (-3.9A)
None
0.99A 4l1aB-4zgvA:
undetectable
4l1aB-4zgvA:
8.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EF3_L_TRPL101_0
(TRANSCRIPTION
ATTENUATION PROTEIN
MTRB)
2gsk VITAMIN B12
TRANSPORTER BTUB

(Escherichia
coli)
4 / 8 THR A  40
SER A  60
GLY A 145
THR A 175
None
None
LDA  A 803 (-4.2A)
None
0.98A 5ef3L-2gskA:
undetectable
5ef3V-2gskA:
undetectable
5ef3L-2gskA:
7.94
5ef3V-2gskA:
7.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IKT_B_TLFB601_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
3lim FRAGACEATOXIN C
(Actinia
fragacea)
3 / 3 TYR A 110
TYR A 133
SER A  54
None
LDA  A 201 (-4.4A)
LDA  A 201 ( 4.9A)
0.50A 5iktB-3limA:
undetectable
5iktB-3limA:
14.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VKQ_B_PCFB1806_0
(NO MECHANORECEPTOR
POTENTIAL C ISOFORM
L)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 6 ILE M  66
LEU M  67
PHE M  71
PHE M  59
BPB  M 402 ( 4.4A)
LDA  M 713 ( 4.2A)
NS5  M 600 ( 4.3A)
BPB  M 402 ( 3.7A)
0.98A 5vkqB-3t6dM:
2.3
5vkqC-3t6dM:
2.3
5vkqB-3t6dM:
10.82
5vkqC-3t6dM:
10.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VKQ_C_PCFC1807_0
(NO MECHANORECEPTOR
POTENTIAL C ISOFORM
L)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 6 ILE M  66
LEU M  67
PHE M  71
PHE M  59
BPB  M 402 ( 4.4A)
LDA  M 713 ( 4.2A)
NS5  M 600 ( 4.3A)
BPB  M 402 ( 3.7A)
0.96A 5vkqC-3t6dM:
2.3
5vkqD-3t6dM:
2.2
5vkqC-3t6dM:
10.82
5vkqD-3t6dM:
10.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VUN_A_ACTA804_0
(NITRIC OXIDE
SYNTHASE, BRAIN)
3t6d PHOTOSYNTHETIC
REACTION CENTER
M-SUBUNIT

(Blastochloris
viridis)
4 / 5 GLY M 125
TRP M 128
VAL M 131
SER M  54
LDA  M 705 ( 3.7A)
None
BPB  M 402 ( 4.7A)
SO4  M 325 (-2.9A)
1.23A 5vunA-3t6dM:
undetectable
5vunA-3t6dM:
20.89