SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'GEM'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EKJ_A_ACTA3001_0
(BETA-CARBONIC
ANHYDRASE)		 3mn8 LP15968P
(Drosophila
melanogaster) 		4 / 8 ASP A 228
GLY A 288
GLY A 287
GLN A 290
 GEM  A 601 (-3.1A)
None
None
None
 0.86A 1ekjA-3mn8A:
undetectable
1ekjB-3mn8A:
undetectable		 1ekjA-3mn8A:
21.10
1ekjB-3mn8A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EKJ_E_ACTE3005_0
(BETA-CARBONIC
ANHYDRASE)		 3mn8 LP15968P
(Drosophila
melanogaster) 		4 / 7 ASP A 228
GLY A 288
GLY A 287
GLN A 290
 GEM  A 601 (-3.1A)
None
None
None
 0.91A 1ekjE-3mn8A:
undetectable
1ekjF-3mn8A:
undetectable		 1ekjE-3mn8A:
21.10
1ekjF-3mn8A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EKJ_F_ACTF3008_0
(BETA-CARBONIC
ANHYDRASE)		 3mn8 LP15968P
(Drosophila
melanogaster) 		4 / 8 GLN A 290
ASP A 228
GLY A 288
GLY A 287
 None
GEM  A 601 (-3.1A)
None
None
 0.86A 1ekjE-3mn8A:
undetectable
1ekjF-3mn8A:
undetectable		 1ekjE-3mn8A:
21.10
1ekjF-3mn8A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EKJ_G_ACTG3002_0
(BETA-CARBONIC
ANHYDRASE)		 3mn8 LP15968P
(Drosophila
melanogaster) 		4 / 8 ASP A 228
GLY A 288
GLY A 287
GLN A 290
 GEM  A 601 (-3.1A)
None
None
None
 0.85A 1ekjG-3mn8A:
undetectable
1ekjH-3mn8A:
undetectable		 1ekjG-3mn8A:
21.10
1ekjH-3mn8A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HA4_B_ACHB603_0
(ACETYLCHOLINESTERASE)		 4a39 METALLO-CARBOXYPEPTI
DASE
(Pseudomonas
aeruginosa) 		4 / 7 TYR A  64
GLU A 170
HIS A 260
GLY A 261
 None
ZN  A1376 ( 2.0A)
ZN  A1376 ( 3.2A)
GEM  A1377 (-4.8A)
 1.21A 2ha4B-4a39A:
3.4		 2ha4B-4a39A:
22.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2X45_B_HSMB1162_1
(ALLERGEN ARG R 1)		 4a39 METALLO-CARBOXYPEPTI
DASE
(Pseudomonas
aeruginosa) 		3 / 3 GLU A 335
HIS A 167
GLU A 170
 GEM  A1377 (-2.7A)
ZN  A1376 ( 3.1A)
ZN  A1376 ( 2.0A)
 0.82A 2x45B-4a39A:
undetectable		 2x45B-4a39A:
14.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2X45_C_HSMC1162_1
(ALLERGEN ARG R 1)		 4a39 METALLO-CARBOXYPEPTI
DASE
(Pseudomonas
aeruginosa) 		3 / 3 GLU A 335
HIS A 167
GLU A 170
 GEM  A1377 (-2.7A)
ZN  A1376 ( 3.1A)
ZN  A1376 ( 2.0A)
 0.84A 2x45C-4a39A:
undetectable		 2x45C-4a39A:
14.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3E23_A_SAMA221_1
(UNCHARACTERIZED
PROTEIN RPA2492)		 3mn8 LP15968P
(Drosophila
melanogaster) 		3 / 3 TYR A 283
ASP A 270
HIS A 217
 GEM  A 601 (-3.3A)
None
ZN  A 999 ( 3.2A)
 0.79A 3e23A-3mn8A:
undetectable		 3e23A-3mn8A:
19.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3U88_A_CHDA611_0
(MENIN)		 3mn8 LP15968P
(Drosophila
melanogaster) 		3 / 3 SER A 224
PHE A 248
LYS A 249
 GEM  A 601 ( 4.2A)
None
None
 0.82A 3u88A-3mn8A:
undetectable		 3u88A-3mn8A:
21.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WRK_D_CAMD502_0
(CAMPHOR
5-MONOOXYGENASE)		 3mn8 LP15968P
(Drosophila
melanogaster) 		4 / 5 LEU A 285
GLY A 279
THR A 277
VAL A 222
 GEM  A 601 (-4.0A)
GEM  A 601 (-3.3A)
None
None
 1.04A 3wrkD-3mn8A:
undetectable		 3wrkD-3mn8A:
22.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QC6_A_KANA201_1
(BIFUNCTIONAL AAC/APH)		 1h8l CARBOXYPEPTIDASE
GP180 RESIDUES
503-882
(Lophonetta
specularioides) 		5 / 11 HIS A 181
GLU A 272
GLN A 257
ASP A 258
ASP A 149
 ZN  A 999 ( 3.1A)
GEM  A 801 (-3.0A)
None
None
None
 1.22A 4qc6A-1h8lA:
0.0		 4qc6A-1h8lA:
18.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QC6_B_KANB201_1
(BIFUNCTIONAL AAC/APH)		 1h8l CARBOXYPEPTIDASE
GP180 RESIDUES
503-882
(Lophonetta
specularioides) 		5 / 12 HIS A 181
GLU A 272
GLN A 257
ASP A 258
ASP A 149
 ZN  A 999 ( 3.1A)
GEM  A 801 (-3.0A)
None
None
None
 1.23A 4qc6B-1h8lA:
0.0		 4qc6B-1h8lA:
18.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Z2E_F_TR6F101_1
(DNA GYRASE SUBUNIT A
DNA GYRASE SUBUNIT B
SYMMETRIZED E-SITE
DNA)		 3mn8 LP15968P
(Drosophila
melanogaster) 		4 / 5 GLY A 166
ARG A 165
GLY A 102
GLU A 104
 None
GEM  A 601 (-3.2A)
None
ZN  A 999 ( 1.7A)
 1.24A 4z2eB-3mn8A:
undetectable
4z2eC-3mn8A:
3.3		 4z2eB-3mn8A:
21.67
4z2eC-3mn8A:
20.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KPC_A_SAMA401_1
(PAVINE
N-METHYLTRANSFERASE)		 1h8l CARBOXYPEPTIDASE
GP180 RESIDUES
503-882
(Lophonetta
specularioides) 		4 / 5 SER A 202
ASN A 144
GLN A 257
ASP A 142
 None
GEM  A 801 (-4.0A)
None
None
 1.31A 5kpcA-1h8lA:
0.2		 5kpcA-1h8lA:
20.81