SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'GAP'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HTT_A_HISA450_0
(HISTIDYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 10 GLU A 188
ARG A 220
GLN A 237
GLU A 241
TYR A 287
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
None
 0.96A 1httA-1ggmA:
23.3		 1httA-1ggmA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HTT_A_HISA450_0
(HISTIDYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 10 GLU A 188
ARG A 220
GLN A 237
TYR A 287
GLY A 307
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
GAP  A1550 ( 4.6A)
 1.18A 1httA-1ggmA:
23.3		 1httA-1ggmA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HTT_B_HISB450_0
(HISTIDYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 188
ARG A 220
GLN A 237
GLU A 241
TYR A 287
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
None
 1.14A 1httB-1ggmA:
23.7		 1httB-1ggmA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HTT_B_HISB450_0
(HISTIDYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 188
ARG A 220
GLN A 237
TYR A 287
GLY A 307
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
GAP  A1550 ( 4.6A)
 1.26A 1httB-1ggmA:
23.7		 1httB-1ggmA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HTT_D_HISD450_0
(HISTIDYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 188
ARG A 220
GLN A 237
GLU A 241
TYR A 287
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
None
 1.05A 1httD-1ggmA:
23.7		 1httD-1ggmA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HTT_D_HISD450_0
(HISTIDYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 188
ARG A 220
GLN A 237
TYR A 287
GLY A 307
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
GAP  A1550 ( 4.6A)
 1.19A 1httD-1ggmA:
23.7		 1httD-1ggmA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1WG8_A_SAMA3142_0
(PREDICTED
S-ADENOSYLMETHIONINE
-DEPENDENT
METHYLTRANSFERASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLY A 363
GLY A 367
GLN A 214
SER A 361
ARG A 260
 GAP  A1550 (-2.7A)
None
None
GAP  A1550 ( 2.4A)
None
 1.08A 1wg8A-1ggmA:
undetectable		 1wg8A-1ggmA:
23.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2OKC_A_SAMA500_0
(TYPE I RESTRICTION
ENZYME STYSJI M
PROTEIN)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		5 / 12 ALA A 319
GLY A 317
GLY A 341
THR A 291
VAL A 289
 GAP  A 601 (-4.3A)
GAP  A 601 (-3.2A)
GAP  A 601 (-4.9A)
None
None
 0.82A 2okcA-4oxiA:
undetectable		 2okcA-4oxiA:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V0M_A_KLNA1501_1
(CYTOCHROME P450 3A4)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		5 / 10 ASP A 247
SER A 259
ILE A 258
PHE A 369
THR A 346
 GAP  A 601 (-2.8A)
None
None
None
None
 1.38A 2v0mA-4oxiA:
undetectable		 2v0mA-4oxiA:
21.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2WD9_A_IBPA1570_1
(ACYL-COENZYME A
SYNTHETASE ACSM2A,
MITOCHONDRIAL)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		4 / 7 GLY A 317
GLY A 341
THR A 343
ARG A 457
 GAP  A 601 (-3.2A)
GAP  A 601 (-4.9A)
GAP  A 601 (-4.0A)
GAP  A 601 (-3.7A)
 0.35A 2wd9A-4oxiA:
36.3		 2wd9A-4oxiA:
26.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2WD9_B_IBPB1570_1
(ACYL-COENZYME A
SYNTHETASE ACSM2A,
MITOCHONDRIAL)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		4 / 8 GLY A 317
GLY A 341
THR A 343
ARG A 457
 GAP  A 601 (-3.2A)
GAP  A 601 (-4.9A)
GAP  A 601 (-4.0A)
GAP  A 601 (-3.7A)
 0.36A 2wd9B-4oxiA:
35.7		 2wd9B-4oxiA:
26.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y7K_C_SALC1302_1
(LYSR-TYPE REGULATORY
PROTEIN)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 ILE A 240
PHE A 243
PHE A 194
ARG A 311
ILE A 193
 None
None
None
GAP  A1550 (-3.8A)
None
 1.25A 2y7kC-1ggmA:
undetectable		 2y7kC-1ggmA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZT7_A_GLYA1300_0
(GLYCYL-TRNA
SYNTHETASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		7 / 7 GLU A 188
ARG A 220
GLU A 239
TYR A 287
ARG A 311
GLU A 359
SER A 361
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 2.2A)
None
GAP  A1550 (-3.8A)
GAP  A1550 ( 2.7A)
GAP  A1550 ( 2.4A)
 0.59A 2zt7A-1ggmA:
34.7		 2zt7A-1ggmA:
28.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TKA_A_SAMA400_0
(RIBOSOMAL RNA SMALL
SUBUNIT
METHYLTRANSFERASE H)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		5 / 12 THR A 350
GLY A 341
GLY A 317
GLN A 403
GLU A 371
 None
GAP  A 601 (-4.9A)
GAP  A 601 (-3.2A)
None
None
 1.38A 3tkaA-4oxiA:
undetectable		 3tkaA-4oxiA:
20.24
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3VNS_A_DVAA602_0
(NRPS ADENYLATION
PROTEIN CYTC1)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		5 / 7 PHE A 246
ASP A 247
GLY A 317
THR A 343
LYS A 452
 GAP  A 601 (-4.5A)
GAP  A 601 (-2.8A)
GAP  A 601 (-3.2A)
GAP  A 601 (-4.0A)
GAP  A 601 (-2.8A)
 0.64A 3vnsA-4oxiA:
43.1		 3vnsA-4oxiA:
30.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4K87_A_ADNA602_1
(PROLINE--TRNA LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		4 / 8 ARG A 220
ARG A 231
PHE A 235
ARG A 366
 GAP  A1550 ( 2.4A)
None
GAP  A1550 ( 3.5A)
GAP  A1550 ( 3.4A)
 0.73A 4k87A-1ggmA:
25.6		 4k87A-1ggmA:
21.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4K87_A_ADNA602_1
(PROLINE--TRNA LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		4 / 8 ARG A 220
ARG A 231
PHE A 235
GLY A 307
 GAP  A1550 ( 2.4A)
None
GAP  A1550 ( 3.5A)
GAP  A1550 ( 4.6A)
 0.86A 4k87A-1ggmA:
25.6		 4k87A-1ggmA:
21.96
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4KR3_A_GLYA701_0
(GLYCINE--TRNA LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		6 / 6 GLU A 188
ARG A 220
GLU A 239
ARG A 311
GLU A 359
SER A 361
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 2.2A)
GAP  A1550 (-3.8A)
GAP  A1550 ( 2.7A)
GAP  A1550 ( 2.4A)
 0.65A 4kr3A-1ggmA:
35.5		 4kr3A-1ggmA:
30.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZXI_A_GLYA1402_0
(TYROCIDINE
SYNTHETASE 3)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		5 / 7 PHE A 246
ASP A 247
GLY A 317
THR A 343
LYS A 452
 GAP  A 601 (-4.5A)
GAP  A 601 (-2.8A)
GAP  A 601 (-3.2A)
GAP  A 601 (-4.0A)
GAP  A 601 (-2.8A)
 0.92A 4zxiA-4oxiA:
41.8		 4zxiA-4oxiA:
18.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZZC_B_ACTB401_0
(PROTON-GATED ION
CHANNEL)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		4 / 6 ILE A 193
PHE A 194
ARG A 311
GLU A 188
 None
None
GAP  A1550 (-3.8A)
GAP  A1550 ( 2.6A)
 1.35A 4zzcB-1ggmA:
0.0
4zzcC-1ggmA:
0.0		 4zzcB-1ggmA:
19.68
4zzcC-1ggmA:
19.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E3I_A_HISA502_0
(HISTIDINE--TRNA
LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 188
ARG A 220
GLN A 237
GLU A 241
TYR A 287
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
None
 1.02A 5e3iA-1ggmA:
21.9		 5e3iA-1ggmA:
24.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E3I_A_HISA502_0
(HISTIDINE--TRNA
LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 188
ARG A 220
GLN A 237
TYR A 287
GLY A 307
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
GAP  A1550 ( 4.6A)
 1.12A 5e3iA-1ggmA:
21.9		 5e3iA-1ggmA:
24.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E3I_B_HISB502_0
(HISTIDINE--TRNA
LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 11 GLU A 188
ARG A 220
GLN A 237
GLU A 241
TYR A 287
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
None
 1.01A 5e3iB-1ggmA:
21.5		 5e3iB-1ggmA:
24.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E3I_B_HISB502_0
(HISTIDINE--TRNA
LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 11 GLU A 188
ARG A 220
GLN A 237
TYR A 287
GLY A 307
 GAP  A1550 ( 2.6A)
GAP  A1550 ( 2.4A)
GAP  A1550 ( 3.5A)
None
GAP  A1550 ( 4.6A)
 1.11A 5e3iB-1ggmA:
21.5		 5e3iB-1ggmA:
24.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5N9X_A_THRA601_0
(ADENYLATION DOMAIN)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		5 / 7 PHE A 246
ASP A 247
GLY A 317
GLY A 341
LYS A 452
 GAP  A 601 (-4.5A)
GAP  A 601 (-2.8A)
GAP  A 601 (-3.2A)
GAP  A 601 (-4.9A)
GAP  A 601 (-2.8A)
 0.95A 5n9xA-4oxiA:
44.3		 5n9xA-4oxiA:
29.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5NZX_A_9F2A1102_1
(DNA CROSS-LINK
REPAIR 1A PROTEIN)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		4 / 8 ASN A 227
PHE A 228
ARG A 366
GLY A 367
 None
None
GAP  A1550 ( 3.4A)
None
 1.00A 5nzxA-1ggmA:
1.6		 5nzxA-1ggmA:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OV9_A_CVIA608_0
(ACETYLCHOLINESTERASE)		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		4 / 7 THR A 435
LEU A 441
VAL A 349
TYR A 340
 None
None
None
GAP  A 601 (-4.9A)
 1.12A 5ov9A-4oxiA:
undetectable		 5ov9A-4oxiA:
20.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VOP_B_C2FB3001_0
(5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		5 / 12 GLU A 239
GLY A 216
VAL A 200
GLY A 192
ILE A 193
 GAP  A1550 ( 2.2A)
None
None
None
None
 1.03A 5vopB-1ggmA:
undetectable		 5vopB-1ggmA:
24.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BNI_A_ADNA602_1
(LYSINE--TRNA LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		6 / 10 ARG A 220
GLU A 222
PHE A 235
GLU A 304
GLY A 363
ARG A 366
 GAP  A1550 ( 2.4A)
GAP  A1550 (-3.2A)
GAP  A1550 ( 3.5A)
GAP  A1550 ( 3.8A)
GAP  A1550 (-2.7A)
GAP  A1550 ( 3.4A)
 0.64A 6bniA-1ggmA:
13.7		 6bniA-1ggmA:
10.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BNI_B_ADNB602_1
(LYSINE--TRNA LIGASE)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		6 / 10 ARG A 220
GLU A 222
PHE A 235
GLU A 304
GLY A 363
ARG A 366
 GAP  A1550 ( 2.4A)
GAP  A1550 (-3.2A)
GAP  A1550 ( 3.5A)
GAP  A1550 ( 3.8A)
GAP  A1550 (-2.7A)
GAP  A1550 ( 3.4A)
 0.62A 6bniB-1ggmA:
14.5		 6bniB-1ggmA:
10.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6C06_D_FI8D1404_1
(DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA')		 4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN
(Vibrio
cholerae) 		3 / 3 ARG A 446
LYS A 452
ARG A 110
 GAP  A 601 (-4.3A)
GAP  A 601 (-2.8A)
None
 1.07A 6c06D-4oxiA:
undetectable		 6c06D-4oxiA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DJZ_A_GMJA301_1
(SIGMA NON-OPIOID
INTRACELLULAR
RECEPTOR 1)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		4 / 6 SER A 284
ASP A 293
GLN A 278
GLU A 304
 None
None
None
GAP  A1550 ( 3.8A)
 1.00A 6djzA-1ggmA:
0.0		 6djzA-1ggmA:
18.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DJZ_B_GMJB301_1
(SIGMA NON-OPIOID
INTRACELLULAR
RECEPTOR 1)		 1ggm GLYCINE--TRNA LIGASE
(Thermus
thermophilus) 		4 / 6 ASP A 293
GLN A 278
VAL A 292
GLU A 304
 None
None
None
GAP  A1550 ( 3.8A)
 1.20A 6djzB-1ggmA:
0.0		 6djzB-1ggmA:
18.78