SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'DUP'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_A_TRPA81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)		 5cct DUTPASE
(Staphylococcus
virus
80alpha) 		4 / 7 GLY A  89
ALA A 136
THR A  47
ILE A  90
 DUP  A 201 (-4.0A)
None
None
None
 0.79A 1gtnA-5cctA:
undetectable
1gtnK-5cctA:
undetectable		 1gtnA-5cctA:
18.90
1gtnK-5cctA:
18.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_F_TRPF81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)		 5cct DUTPASE
(Staphylococcus
virus
80alpha) 		4 / 8 GLY A  89
ALA A 136
THR A  47
ILE A  90
 DUP  A 201 (-4.0A)
None
None
None
 0.83A 1gtnE-5cctA:
undetectable
1gtnF-5cctA:
undetectable		 1gtnE-5cctA:
18.90
1gtnF-5cctA:
18.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UOB_A_PNNA1311_1
(DEACETOXYCEPHALOSPOR
IN C SYNTHETASE)		 3p48 DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
(Saccharomyces
cerevisiae) 		3 / 3 ARG A 111
ARG A  68
ILE A 106
 None
DUP  A 148 (-3.8A)
None
 0.79A 1uobA-3p48A:
undetectable		 1uobA-3p48A:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UTD_I_TRPI81_0
(TRANSCRIPTION
ATTENUATION PROTEIN
MTRB)		 5cct DUTPASE
(Staphylococcus
virus
80alpha) 		4 / 8 GLY A  89
ALA A 136
THR A  47
ILE A  90
 DUP  A 201 (-4.0A)
None
None
None
 0.80A 1utdI-5cctA:
undetectable
1utdJ-5cctA:
undetectable		 1utdI-5cctA:
18.90
1utdJ-5cctA:
18.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1XOQ_A_ROFA502_1
(CAMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE 4D)		 2cic DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDE HYDROLASE
(Campylobacter
jejuni) 		3 / 3 ASN A  22
TRP A  26
GLN A 183
 DUP  A1968 (-3.1A)
None
None
 1.12A 1xoqA-2cicA:
undetectable		 1xoqA-2cicA:
18.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2KOT_B_ANWB99_0
(PROTEIN S100-A13)		 2hxd DCTP DEAMINASE,
DUMP-FORMING
(Methanocaldococc
us
jannaschii) 		4 / 8 ALA A 145
VAL A 191
THR A 143
THR A 100
 None
None
DUP  A 206 (-4.5A)
None
 1.18A 2kotB-2hxdA:
undetectable		 2kotB-2hxdA:
18.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2W98_A_P1ZA1351_1
(PROSTAGLANDIN
REDUCTASE 2)		 3zf4 DUTPASE
(Staphylococcus
virus
80alpha) 		5 / 10 TYR A  27
ILE A 140
MET A  16
LEU A  88
VAL A  49
 None
None
None
DUP  A 777 (-4.6A)
None
 1.16A 2w98A-3zf4A:
undetectable		 2w98A-3zf4A:
22.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2W98_A_P1ZA1351_1
(PROSTAGLANDIN
REDUCTASE 2)		 4gv8 DUTPASE
(Staphylococcus
virus
11) 		5 / 10 TYR A  27
ILE A 139
MET A  16
LEU A  88
VAL A  49
 None
None
None
DUP  A 201 (-4.7A)
None
 1.21A 2w98A-4gv8A:
undetectable		 2w98A-4gv8A:
21.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OCT_A_1N1A663_2
(TYROSINE-PROTEIN
KINASE BTK)		 2xy3 SPBC2
PROPHAGE-DERIVED
DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
YOSS
(Bacillus
subtilis) 		4 / 5 PHE A  91
ILE A 108
ASN A  87
PHE A  92
 DUP  A1130 (-3.3A)
None
None
None
 1.35A 3octA-2xy3A:
undetectable		 3octA-2xy3A:
19.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3S8P_B_SAMB500_1
(HISTONE-LYSINE
N-METHYLTRANSFERASE
SUV420H1)		 3i93 DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
(Mycobacterium
tuberculosis) 		3 / 3 HIS A  62
SER A  74
ASN A  77
 None
TRS  A 202 (-3.0A)
DUP  A 201 (-3.2A)
 0.82A 3s8pB-3i93A:
undetectable		 3s8pB-3i93A:
20.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EM2_A_SALA503_1
(UNCHARACTERIZED
HTH-TYPE
TRANSCRIPTIONAL
REGULATOR SAR2349)		 3p48 DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
(Saccharomyces
cerevisiae) 		4 / 6 ARG A  68
ILE A  65
VAL A  94
LEU A  96
 DUP  A 148 (-3.8A)
None
None
None
 1.04A 4em2A-3p48A:
undetectable		 4em2A-3p48A:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OKX_A_198A1002_2
(ANDROGEN RECEPTOR)		 2d4n DU
(Mason-Pfizer
monkey
virus) 		4 / 6 LEU A 169
MET A 137
LEU A 142
ILE A 158
 None
None
None
DUP  A 777 ( 4.5A)
 1.09A 4okxA-2d4nA:
undetectable		 4okxA-2d4nA:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OLT_B_GCSB303_1
(CHITOSANASE)		 2cic DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDE HYDROLASE
(Campylobacter
jejuni) 		4 / 6 ILE A  73
ASP A  77
VAL A 177
HIS A  80
 None
MG  A1970 ( 3.2A)
None
DUP  A1968 (-3.7A)
 0.97A 4oltB-2cicA:
undetectable		 4oltB-2cicA:
21.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QGI_A_ROCA101_1
(PROTEASE)		 3zf4 DUTPASE
(Staphylococcus
virus
80alpha) 		6 / 11 GLY A  83
ALA A  84
ASP A  81
GLY A  59
ILE A 140
VAL A  49
 None
DUP  A 777 (-3.3A)
DUP  A 777 (-3.6A)
None
None
None
 1.39A 4qgiA-3zf4A:
undetectable		 4qgiA-3zf4A:
16.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CPR_B_SAMB402_1
(HISTONE-LYSINE
N-METHYLTRANSFERASE
SUV420H1)		 3i93 DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
(Mycobacterium
tuberculosis) 		3 / 3 HIS A  62
SER A  74
ASN A  77
 None
TRS  A 202 (-3.0A)
DUP  A 201 (-3.2A)
 0.89A 5cprB-3i93A:
undetectable		 5cprB-3i93A:
21.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5I71_A_68PA701_1
(SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER)		 3i93 DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
(Mycobacterium
tuberculosis) 		5 / 12 ILE A  90
ALA A  50
GLY A  48
GLY A  80
VAL A  61
 DUP  A 201 (-4.7A)
None
None
DUP  A 201 (-3.4A)
DUP  A 201 ( 4.8A)
 1.30A 5i71A-3i93A:
undetectable		 5i71A-3i93A:
14.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5I75_A_68PA701_1
(SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER)		 3i93 DEOXYURIDINE
5'-TRIPHOSPHATE
NUCLEOTIDOHYDROLASE
(Mycobacterium
tuberculosis) 		5 / 12 ILE A  90
ALA A  50
GLY A  48
GLY A  80
VAL A  61
 DUP  A 201 (-4.7A)
None
None
DUP  A 201 (-3.4A)
DUP  A 201 ( 4.8A)
 1.24A 5i75A-3i93A:
undetectable		 5i75A-3i93A:
14.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MUE_A_VIVA302_0
(ALPHA-TOCOPHEROL
TRANSFER PROTEIN)		 2hxd DCTP DEAMINASE,
DUMP-FORMING
(Methanocaldococc
us
jannaschii) 		5 / 12 ILE A 142
VAL A  34
ILE A  65
LEU A 125
VAL A  67
 DUP  A 206 (-4.3A)
None
None
None
None
 0.99A 5mueA-2hxdA:
undetectable		 5mueA-2hxdA:
20.49