SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'DQR'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1AV2_C_DVAC6_0
(GRAMICIDIN A)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		3 / 3 ALA A 429
VAL A 380
TRP A 384
 None
None
DQR  A 544 (-4.1A)
 0.85A 1av2C-5g5zA:
undetectable
1av2D-5g5zA:
undetectable		 1av2C-5g5zA:
2.85
1av2D-5g5zA:
2.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NT6_A_DVAA6_0
(GRAMICIDIN C)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		3 / 3 ALA A 429
VAL A 380
TRP A 384
 None
None
DQR  A 544 (-4.1A)
 0.81A 1nt6A-5g5zA:
undetectable		 1nt6A-5g5zA:
2.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NT6_B_DVAB6_0
(GRAMICIDIN C)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		3 / 3 ALA A 429
VAL A 380
TRP A 384
 None
None
DQR  A 544 (-4.1A)
 0.81A 1nt6B-5g5zA:
undetectable		 1nt6B-5g5zA:
2.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1V8B_A_ADNA502_1
(ADENOSYLHOMOCYSTEINA
SE)		 3ldr FRUCTOSYLTRANSFERASE
(Aspergillus
japonicus) 		5 / 12 LEU A  78
ASP A  60
THR A 293
LEU A 421
HIS A  64
 None
DQR  A3168 (-2.5A)
DQR  A3168 ( 4.9A)
None
None
 1.39A 1v8bA-3ldrA:
undetectable		 1v8bA-3ldrA:
22.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1V8B_B_ADNB1502_1
(ADENOSYLHOMOCYSTEINA
SE)		 3ldr FRUCTOSYLTRANSFERASE
(Aspergillus
japonicus) 		5 / 12 LEU A  78
ASP A  60
THR A 293
LEU A 421
HIS A  64
 None
DQR  A3168 (-2.5A)
DQR  A3168 ( 4.9A)
None
None
 1.38A 1v8bB-3ldrA:
undetectable		 1v8bB-3ldrA:
22.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1V8B_D_ADND3502_1
(ADENOSYLHOMOCYSTEINA
SE)		 3ldr FRUCTOSYLTRANSFERASE
(Aspergillus
japonicus) 		5 / 12 LEU A  78
ASP A  60
THR A 293
LEU A 421
HIS A  64
 None
DQR  A3168 (-2.5A)
DQR  A3168 ( 4.9A)
None
None
 1.41A 1v8bD-3ldrA:
undetectable		 1v8bD-3ldrA:
22.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IZQ_B_DVAB6_0
(GRAMICIDIN D)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		3 / 3 TRP A 384
ALA A 429
VAL A 380
 DQR  A 544 (-4.1A)
None
None
 0.81A 2izqA-5g5zA:
undetectable
2izqB-5g5zA:
undetectable		 2izqA-5g5zA:
2.85
2izqB-5g5zA:
2.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NXE_A_SAMA302_1
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)		 3ugg SUCROSE:(SUCROSE/FRU
CTAN)
6-FRUCTOSYLTRANSFERA
SE
(Pachysandra
terminalis) 		3 / 3 THR A 153
ASP A 244
SER A 242
 None
DQR  A 800 (-3.6A)
None
 0.81A 2nxeA-3uggA:
undetectable		 2nxeA-3uggA:
20.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2RCT_A_RTLA140_1
(RETINOL-BINDING
PROTEIN II, CELLULAR)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		3 / 3 GLN A 378
THR A 439
TRP A 384
 None
None
DQR  A 544 (-4.1A)
 1.13A 2rctA-5g5zA:
undetectable		 2rctA-5g5zA:
13.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZUL_A_SAMA376_0
(PROBABLE RIBOSOMAL
RNA SMALL SUBUNIT
METHYLTRANSFERASE)		 3ugg SUCROSE:(SUCROSE/FRU
CTAN)
6-FRUCTOSYLTRANSFERA
SE
(Pachysandra
terminalis) 		5 / 12 PHE A  47
GLY A  94
ALA A 122
ASP A  33
PRO A  37
 None
None
None
DQR  A 800 (-3.0A)
None
 1.11A 2zulA-3uggA:
undetectable		 2zulA-3uggA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3HAM_B_LLLB500_1
(AMINOGLYCOSIDE
PHOSPHOTRANSFERASE)		 3ugg SUCROSE:(SUCROSE/FRU
CTAN)
6-FRUCTOSYLTRANSFERA
SE
(Pachysandra
terminalis) 		5 / 11 ASP A 249
CYH A 212
ASP A 157
SER A  93
ASP A  33
 None
None
DQR  A 800 (-3.1A)
DQR  A 800 (-3.0A)
DQR  A 800 (-3.0A)
 1.21A 3hamB-3uggA:
0.0		 3hamB-3uggA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3L8L_A_DVAA6_0
(GRAMICIDIN D)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		3 / 3 ALA A 429
VAL A 380
TRP A 384
 None
None
DQR  A 544 (-4.1A)
 0.84A 3l8lA-5g5zA:
undetectable
3l8lB-5g5zA:
undetectable		 3l8lA-5g5zA:
2.85
3l8lB-5g5zA:
3.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N58_D_ADND500_1
(ADENOSYLHOMOCYSTEINA
SE)		 3ldr FRUCTOSYLTRANSFERASE
(Aspergillus
japonicus) 		5 / 12 LEU A  78
ASP A  60
THR A 293
LEU A 421
HIS A  64
 None
DQR  A3168 (-2.5A)
DQR  A3168 ( 4.9A)
None
None
 1.38A 3n58D-3ldrA:
undetectable		 3n58D-3ldrA:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V8V_B_SAMB801_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE L)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		5 / 11 GLY A 321
ASP A 327
VAL A 328
ASN A 318
LEU A 451
 None
None
None
DQR  A 544 (-3.1A)
None
 1.14A 3v8vB-5g5zA:
undetectable		 3v8vB-5g5zA:
22.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ZQ8_D_DVAD8_0
(VAL-GRAMICIDIN A)		 3ugg SUCROSE:(SUCROSE/FRU
CTAN)
6-FRUCTOSYLTRANSFERA
SE
(Pachysandra
terminalis) 		3 / 3 TRP A  30
VAL A  91
TRP A  57
 None
None
DQR  A 800 ( 3.9A)
 1.18A 3zq8C-3uggA:
undetectable
3zq8D-3uggA:
undetectable		 3zq8C-3uggA:
4.17
3zq8D-3uggA:
4.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5M66_A_ADNA502_1
(ADENOSYLHOMOCYSTEINA
SE)		 3ldr FRUCTOSYLTRANSFERASE
(Aspergillus
japonicus) 		5 / 12 LEU A  78
ASP A  60
THR A 293
LEU A 421
HIS A  64
 None
DQR  A3168 (-2.5A)
DQR  A3168 ( 4.9A)
None
None
 1.33A 5m66A-3ldrA:
undetectable		 5m66A-3ldrA:
21.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5UTU_F_ADNF503_1
(ADENOSYLHOMOCYSTEINA
SE)		 3ldr FRUCTOSYLTRANSFERASE
(Aspergillus
japonicus) 		5 / 12 LEU A  78
ASP A  60
THR A 293
LEU A 421
HIS A  64
 None
DQR  A3168 (-2.5A)
DQR  A3168 ( 4.9A)
None
None
 1.37A 5utuF-3ldrA:
undetectable		 5utuF-3ldrA:
21.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6MN4_B_AM2B301_0
(AMINOGLYCOSIDE
N(3)-ACETYLTRANSFERA
SE, AAC(3)-IVA)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		4 / 8 TRP A 314
HIS A 177
GLU A 167
GLU A 423
 DQR  A 544 (-4.1A)
DQR  A 544 (-4.7A)
DQR  A 544 (-2.8A)
DQR  A 544 (-2.8A)
 1.14A 6mn4B-5g5zA:
undetectable		 6mn4B-5g5zA:
19.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6MN4_F_AM2F301_0
(AMINOGLYCOSIDE
N(3)-ACETYLTRANSFERA
SE, AAC(3)-IVA)		 5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN
(Streptococcus
pneumoniae) 		4 / 7 TRP A 314
HIS A 177
GLU A 167
GLU A 423
 DQR  A 544 (-4.1A)
DQR  A 544 (-4.7A)
DQR  A 544 (-2.8A)
DQR  A 544 (-2.8A)
 1.29A 6mn4F-5g5zA:
undetectable		 6mn4F-5g5zA:
19.19