SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'DPO'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1L7F_A_BCZA801_1
(NEURAMINIDASE)		 2vg2 UNDECAPRENYL
PYROPHOSPHATE
SYNTHETASE
(Mycobacterium
tuberculosis) 		3 / 3 ARG A 127
ARG A 250
ARG A  89
 DPO  A1297 ( 3.0A)
IPE  A1298 (-3.7A)
DPO  A1297 (-2.7A)
 1.02A 1l7fA-2vg2A:
undetectable		 1l7fA-2vg2A:
21.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1L7H_A_BCZA801_1
(NEURAMINIDASE)		 2vg2 UNDECAPRENYL
PYROPHOSPHATE
SYNTHETASE
(Mycobacterium
tuberculosis) 		3 / 3 ARG A 127
ARG A 250
ARG A  89
 DPO  A1297 ( 3.0A)
IPE  A1298 (-3.7A)
DPO  A1297 (-2.7A)
 1.03A 1l7hA-2vg2A:
undetectable		 1l7hA-2vg2A:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2XN3_A_ID8A1356_1
(THYROXINE-BINDING
GLOBULIN)		 3h20 REPLICATION PROTEIN
B
(Plasmid
RSF1010) 		4 / 8 LEU A  51
LYS A  52
ASN A  55
ARG A 145
 None
None
None
DPO  A 327 (-4.0A)
 0.75A 2xn3A-3h20A:
undetectable
2xn3B-3h20A:
undetectable		 2xn3A-3h20A:
20.22
2xn3B-3h20A:
8.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3B0W_B_DGXB1_1
(NUCLEAR RECEPTOR
ROR-GAMMA)		 3crr TRNA
DELTA(2)-ISOPENTENYL
PYROPHOSPHATE
TRANSFERASE
(Pseudomonas
aeruginosa) 		5 / 12 GLN A 288
LEU A 216
ALA A  15
LEU A  33
LEU A  57
 TRS  A 327 ( 4.9A)
None
DPO  A 326 (-4.6A)
None
None
 1.30A 3b0wB-3crrA:
undetectable		 3b0wB-3crrA:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UFN_A_ROCA401_2
(HIV-1 PROTEASE)		 3h20 REPLICATION PROTEIN
B
(Plasmid
RSF1010) 		4 / 7 ARG A 145
GLY A  11
ILE A  10
VAL A  98
 DPO  A 327 (-4.0A)
None
None
None
 0.70A 3ufnB-3h20A:
undetectable		 3ufnB-3h20A:
13.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UFN_A_ROCA402_1
(HIV-1 PROTEASE)		 4di5 5-EPI-ARISTOLOCHENE
SYNTHASE
(Nicotiana
tabacum) 		4 / 5 ARG A 441
LEU A 395
PRO A 389
ASP A 445
 DPO  A 605 ( 3.1A)
None
None
MG  A 604 (-3.8A)
 1.05A 3ufnA-4di5A:
undetectable
3ufnB-4di5A:
undetectable		 3ufnA-4di5A:
13.45
3ufnB-4di5A:
13.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W37_A_ACRA1001_1
(ALPHA-GLUCOSIDASE)		 4di5 5-EPI-ARISTOLOCHENE
SYNTHASE
(Nicotiana
tabacum) 		5 / 12 ASP A 444
ALA A 447
ASN A 523
ASP A 302
ASP A 525
 DPO  A 605 (-2.6A)
None
None
None
DPO  A 605 ( 4.6A)
 1.42A 3w37A-4di5A:
undetectable		 3w37A-4di5A:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WEL_A_ACRA1001_1
(ALPHA-GLUCOSIDASE)		 4di5 5-EPI-ARISTOLOCHENE
SYNTHASE
(Nicotiana
tabacum) 		5 / 12 ASP A 444
ALA A 447
ASN A 523
ASP A 302
ASP A 525
 DPO  A 605 (-2.6A)
None
None
None
DPO  A 605 ( 4.6A)
 1.38A 3welA-4di5A:
undetectable		 3welA-4di5A:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WEM_A_ACRA1001_1
(ALPHA-GLUCOSIDASE)		 4di5 5-EPI-ARISTOLOCHENE
SYNTHASE
(Nicotiana
tabacum) 		5 / 12 ASP A 444
ALA A 447
ASN A 523
ASP A 302
ASP A 525
 DPO  A 605 (-2.6A)
None
None
None
DPO  A 605 ( 4.6A)
 1.40A 3wemA-4di5A:
undetectable		 3wemA-4di5A:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WEN_A_ACRA1001_1
(ALPHA-GLUCOSIDASE)		 4di5 5-EPI-ARISTOLOCHENE
SYNTHASE
(Nicotiana
tabacum) 		5 / 12 ASP A 444
ALA A 447
ASN A 523
ASP A 302
ASP A 525
 DPO  A 605 (-2.6A)
None
None
None
DPO  A 605 ( 4.6A)
 1.41A 3wenA-4di5A:
undetectable		 3wenA-4di5A:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WEO_A_ACRA1001_1
(ALPHA-GLUCOSIDASE)		 4di5 5-EPI-ARISTOLOCHENE
SYNTHASE
(Nicotiana
tabacum) 		5 / 12 ASP A 444
ALA A 447
ASN A 523
ASP A 302
ASP A 525
 DPO  A 605 (-2.6A)
None
None
None
DPO  A 605 ( 4.6A)
 1.40A 3weoA-4di5A:
undetectable		 3weoA-4di5A:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PFJ_A_ADNA502_2
(ADENOSYLHOMOCYSTEINA
SE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		4 / 7 GLU A 130
THR A  36
THR A 136
LEU A 194
 DPO  A 230 ( 4.8A)
None
None
None
 1.11A 4pfjA-3r20A:
2.7		 4pfjA-3r20A:
22.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WQD_A_GAIA1005_0
(THIOSULFATE
DEHYDROGENASE)		 2vg2 UNDECAPRENYL
PYROPHOSPHATE
SYNTHETASE
(Mycobacterium
tuberculosis) 		4 / 4 ARG A  89
ARG A 127
GLY A  77
ARG A  80
 DPO  A1297 (-2.7A)
DPO  A1297 ( 3.0A)
DPO  A1297 (-3.0A)
DPO  A1297 (-3.8A)
 0.90A 4wqdA-2vg2A:
0.0		 4wqdA-2vg2A:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5V96_A_ADNA502_2
(S-ADENOSYL-L-HOMOCYS
TEINE HYDROLASE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		4 / 4 GLU A 130
THR A  36
THR A 136
LEU A 194
 DPO  A 230 ( 4.8A)
None
None
None
 1.34A 5v96A-3r20A:
2.4		 5v96A-3r20A:
18.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5V96_B_ADNB502_2
(S-ADENOSYL-L-HOMOCYS
TEINE HYDROLASE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		4 / 4 GLU A 130
THR A  36
THR A 136
LEU A 194
 DPO  A 230 ( 4.8A)
None
None
None
 1.36A 5v96B-3r20A:
2.5		 5v96B-3r20A:
18.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5V96_C_ADNC502_2
(S-ADENOSYL-L-HOMOCYS
TEINE HYDROLASE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		4 / 4 GLU A 130
THR A  36
THR A 136
LEU A 194
 DPO  A 230 ( 4.8A)
None
None
None
 1.34A 5v96C-3r20A:
2.5		 5v96C-3r20A:
18.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5V96_D_ADND502_2
(S-ADENOSYL-L-HOMOCYS
TEINE HYDROLASE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		4 / 4 GLU A 130
THR A  36
THR A 136
LEU A 194
 DPO  A 230 ( 4.8A)
None
None
None
 1.34A 5v96D-3r20A:
2.5		 5v96D-3r20A:
18.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VOP_A_C2FA3001_0
(5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 GLY A  17
VAL A 221
LEU A  29
VAL A 144
ILE A 146
 DPO  A 230 (-3.1A)
None
None
None
None
 0.84A 5vopA-3r20A:
undetectable		 5vopA-3r20A:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XPR_A_K86A1201_1
(ENDOTHELIN B
RECEPTOR,ENDOLYSIN,E
NDOTHELIN B RECEPTOR)		 3crr TRNA
DELTA(2)-ISOPENTENYL
PYROPHOSPHATE
TRANSFERASE
(Pseudomonas
aeruginosa) 		5 / 12 GLN A 288
LEU A 216
ARG A 213
ILE A 220
ALA A  15
 TRS  A 327 ( 4.9A)
None
None
None
DPO  A 326 (-4.6A)
 1.31A 5xprA-3crrA:
undetectable		 5xprA-3crrA:
23.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Y9A_A_AR3A201_1
(PEPTIDYL-TRNA
HYDROLASE)		 3r20 CYTIDYLATE KINASE
(Mycolicibacteriu
m
smegmatis) 		4 / 6 ALA A 161
GLN A 162
GLN A 210
ASP A 209
 None
DPO  A 230 (-2.9A)
None
None
 1.39A 5y9aA-3r20A:
2.3		 5y9aA-3r20A:
22.18