SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'COM'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	2PRG_B_BRLB2_1 (PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA)	5a8r	METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA METHYL-COENZYME M REDUCTASE II SUBUNIT GAMMA METHYL-COENZYME M REDUCTASE II, SUBUNIT BETA (Methanothermobac ter marburgensis)	5 / 12	SER B 329 HIS B 364 VAL C 136 LEU C 120 TYR A 446	None None None COM A 601 ( 4.6A) None	1.44A	2prgB-5a8rB: undetectable	2prgB-5a8rB: 21.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	2Y6R_B_CTCB1385_0 (TETX2 PROTEIN)	2c3d	2-OXOPROPYL-COM REDUCTASE (Xanthobacter autotrophicus)	4 / 8	ARG A 317 GLY A 51 PRO A 83 MET A 361	FAD A1524 ( 4.8A) FAD A1524 ( 4.8A) COM A1525 ( 4.2A) FAD A1524 ( 3.6A)	0.95A	2y6rB-2c3dA: 8.8	2y6rB-2c3dA: 23.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4A6D_A_SAMA1350_0 (HYDROXYINDOLE O-METHYLTRANSFERASE)	5odr	HETERODISULFIDE REDUCTASE, SUBUNIT B HETERODISULFIDE REDUCTASE, SUBUNIT C (Methanothermococ cus thermolithotroph icus; Methanothermococ cus thermolithotroph icus)	5 / 12	TYR C 52 LEU B 207 GLY B 198 ILE C 97 ALA B 196	SF4 C 202 (-4.9A) None COM B 303 (-4.0A) None 9S8 B 302 ( 4.2A)	1.15A	4a6dA-5odrC: undetectable	4a6dA-5odrC: 20.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4AZV_A_SAMA1474_1 (WBDD)	5a8r	METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA METHYL-COENZYME M REDUCTASE II, SUBUNIT BETA (Methanothermobac ter marburgensis; Methanothermobac ter marburgensis)	4 / 6	TYR A 446 ARG C 123 ASP A 449 GLU A 438	None COM A 601 (-3.9A) None None	1.34A	4azvA-5a8rA: undetectable	4azvA-5a8rA: 22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5AYF_A_C7HA402_1 (HISTONE-LYSINE N-METHYLTRANSFERASE SETD7)	5a8r	METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA METHYL-COENZYME M REDUCTASE II SUBUNIT GAMMA (Methanothermobac ter marburgensis)	4 / 5	TYR B 367 GLY A 331 TYR A 335 GLY A 485	None None COM A 601 ( 4.9A) None	1.02A	5ayfA-5a8rB: undetectable	5ayfA-5a8rB: 19.07
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	5DQY_A_BEZA401_0 (THIOREDOXIN)	4pom	THIOREDOXIN (Homo sapiens)	4 / 8	ILE A 5 LYS A 8 PHE A 11 VAL A 57	None COM A 200 ( 4.1A) None None	0.42A	5dqyA-4pomA: 21.0	5dqyA-4pomA: 96.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5MRA_B_DM2B204_1 (SORCIN)	2c3d	2-OXOPROPYL-COM REDUCTASE (Xanthobacter autotrophicus)	4 / 6	PHE A 57 ARG A 56 ASP A 73 GLY A 50	COM A1525 (-4.4A) COM A1525 (-3.6A) FAD A1524 (-2.7A) FAD A1524 (-3.4A)	1.13A	5mraA-2c3dA: undetectable 5mraB-2c3dA: undetectable	5mraA-2c3dA: 15.24 5mraB-2c3dA: 15.24

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["2PRG_B_BRLB2_1","PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA","5a8r","METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA;METHYL-COENZYME M REDUCTASE II SUBUNIT GAMMA;METHYL-COENZYME M REDUCTASE II, SUBUNIT BETA","Methanothermobacter marburgensis",5,"SER B 329;HIS B 364;VAL C 136;LEU C 120;TYR A 446","None;None;None;COM A 601 ( 4.6A);None","1.44A","2prgB-5a8rB:undetectable",null],["2Y6R_B_CTCB1385_0","TETX2 PROTEIN","2c3d","2-OXOPROPYL-COM REDUCTASE","Xanthobacter autotrophicus",4,"ARG A 317;GLY A  51;PRO A  83;MET A 361","FAD A1524 ( 4.8A);FAD A1524 ( 4.8A);COM A1525 ( 4.2A);FAD A1524 ( 3.6A)","0.95A","2y6rB-2c3dA:8.8","2prgB-5a8rB:21.22"],["4A6D_A_SAMA1350_0","HYDROXYINDOLE O-METHYLTRANSFERASE","5odr","HETERODISULFIDE REDUCTASE, SUBUNIT B;HETERODISULFIDE REDUCTASE, SUBUNIT C","Methanothermococcus thermolithotrophicus;Methanothermococcus thermolithotrophicus",5,"TYR C  52;LEU B 207;GLY B 198;ILE C  97;ALA B 196","SF4 C 202 (-4.9A);None;COM B 303 (-4.0A);None;9S8 B 302 ( 4.2A)","1.15A","4a6dA-5odrC:undetectable","2y6rB-2c3dA:23.15"],["4AZV_A_SAMA1474_1","WBDD","5a8r","METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA;METHYL-COENZYME M REDUCTASE II, SUBUNIT BETA","Methanothermobacter marburgensis;Methanothermobacter marburgensis",4,"TYR A 446;ARG C 123;ASP A 449;GLU A 438","None;COM A 601 (-3.9A);None;None","1.34A","4azvA-5a8rA:undetectable","4a6dA-5odrC:20.40"],["5AYF_A_C7HA402_1","HISTONE-LYSINE N-METHYLTRANSFERASE SETD7","5a8r","METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA;METHYL-COENZYME M REDUCTASE II SUBUNIT GAMMA","Methanothermobacter marburgensis",4,"TYR B 367;GLY A 331;TYR A 335;GLY A 485","None;None;COM A 601 ( 4.9A);None","1.02A","5ayfA-5a8rB:undetectable","4azvA-5a8rA:22.40"],["5DQY_A_BEZA401_0","THIOREDOXIN","4pom","THIOREDOXIN","Homo sapiens",4,"ILE A   5;LYS A   8;PHE A  11;VAL A  57","None;COM A 200 ( 4.1A);None;None","0.42A","5dqyA-4pomA:21.0","5ayfA-5a8rB:19.07"],["5MRA_B_DM2B204_1","SORCIN;SORCIN","2c3d","2-OXOPROPYL-COM REDUCTASE","Xanthobacter autotrophicus",4,"PHE A  57;ARG A  56;ASP A  73;GLY A  50","COM A1525 (-4.4A);COM A1525 (-3.6A);FAD A1524 (-2.7A);FAD A1524 (-3.4A)","1.13A","5mraA-2c3dA:undetectable;5mraB-2c3dA:undetectable","5dqyA-4pomA:96.19"]]