SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'COB'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1AEG_A_4APA296_1
(CYTOCHROME C
PEROXIDASE)
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
4 / 8 HIS A 102
GLY A 179
LEU A 150
ASP A 100
COB  A 301 (-3.7A)
COB  A 301 (-3.2A)
COB  A 301 (-4.3A)
COB  A 301 (-3.5A)
0.71A 1aegA-4jgiA:
undetectable
1aegA-4jgiA:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1IKV_A_EFZA2000_1
(POL POLYPROTEIN)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
5 / 9 LEU A 831
VAL A 766
TYR A 775
GLY A 767
LEU A 800
COB  A 122 (-4.4A)
COB  A 122 ( 4.6A)
None
None
None
1.28A 1ikvA-1bmtA:
1.7
1ikvA-1bmtA:
18.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1PBC_A_BHAA396_0
(P-HYDROXYBENZOATE
HYDROXYLASE)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
5 / 10 GLY A 865
VAL A 866
LEU A 831
TYR A 775
ALA A 869
None
None
COB  A 122 (-4.4A)
None
None
1.25A 1pbcA-1bmtA:
3.3
1pbcA-1bmtA:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3EKW_B_DR7B100_2
(PROTEASE)
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 12 ASP A 193
ILE A 143
VAL A 144
GLY A 145
ALA A 199
None
None
None
COB  A 301 (-3.6A)
COB  A 301 (-3.4A)
0.97A 3ekwB-4jgiA:
undetectable
3ekwB-4jgiA:
18.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NV6_A_CAMA422_0
(CYTOCHROME P450)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
3 / 3 GLY A 833
ILE A 765
VAL A 766
COB  A 122 ( 3.8A)
COB  A 122 (-4.0A)
COB  A 122 ( 4.6A)
0.47A 3nv6A-1bmtA:
0.0
3nv6A-1bmtA:
22.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DO3_A_0LAA602_1
(FATTY-ACID AMIDE
HYDROLASE 1)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
4 / 5 LEU A 870
LEU A 831
MET A 749
THR A 863
None
COB  A 122 (-4.4A)
None
COB  A 122 (-3.4A)
1.45A 4do3A-1bmtA:
1.0
4do3A-1bmtA:
16.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4RZV_B_032B801_2
(SERINE/THREONINE-PRO
TEIN KINASE B-RAF)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
4 / 5 ILE A 832
SER A 838
HIS A 841
ASP A 757
None
None
None
COB  A 122 (-4.1A)
1.20A 4rzvB-1bmtA:
undetectable
4rzvB-1bmtA:
22.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ENT_C_MIYC901_1
(MULTIDRUG EFFLUX
PUMP SUBUNIT
ACRB,MULTIDRUG
EFFLUX PUMP SUBUNIT
ACRB)
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 9 PHE A 195
GLY A 178
SER A 147
ILE A 176
ALA A 192
None
COB  A 301 (-3.6A)
COB  A 301 (-2.7A)
COB  A 301 ( 4.2A)
None
1.30A 5entC-4jgiA:
undetectable
5entC-4jgiA:
18.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIP_C_HFGC1003_0
(PROLYL-TRNA
SYNTHETASE, PUTATIVE)
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 12 LEU A 173
VAL A 136
PRO A 141
PHE A 109
GLY A 117
None
None
None
COB  A 301 (-3.6A)
None
1.21A 5xipC-4jgiA:
6.8
5xipC-4jgiA:
19.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIQ_A_HFGA1002_0
(PROLYL-TRNA
SYNTHETASE (PRORS))
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 12 LEU A 173
VAL A 136
PRO A 141
PHE A 109
GLY A 117
None
None
None
COB  A 301 (-3.6A)
None
1.17A 5xiqA-4jgiA:
7.1
5xiqA-4jgiA:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIQ_D_HFGD1002_0
(PROLYL-TRNA
SYNTHETASE (PRORS))
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 12 LEU A 173
VAL A 136
PRO A 141
PHE A 109
GLY A 117
None
None
None
COB  A 301 (-3.6A)
None
1.25A 5xiqD-4jgiA:
7.1
5xiqD-4jgiA:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZRF_D_EVPD101_1
()
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
4 / 5 GLY A 202
ASP A 201
ARG A 208
GLN A  43
COB  A 301 ( 4.1A)
None
None
None
1.21A 5zrfB-4jgiA:
4.7
5zrfB-4jgiA:
15.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BSG_A_EFZA601_1
(REVERSE
TRANSCRIPTASE P66
SUBUNIT)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
5 / 10 LEU A 831
VAL A 766
TYR A 775
GLY A 767
LEU A 800
COB  A 122 (-4.4A)
COB  A 122 ( 4.6A)
None
None
None
1.38A 6bsgA-1bmtA:
0.0
6bsgA-1bmtA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BXN_B_SAMB901_0
(DIPHTHAMIDE
BIOSYNTHESIS ENZYME
DPH2)
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 12 PHE A 195
LEU A 146
GLY A 145
ILE A 205
ASP A 201
None
None
COB  A 301 (-3.6A)
None
None
1.24A 6bxnB-4jgiA:
5.6
6bxnB-4jgiA:
21.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BZO_C_FI8C1201_0
(DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA)
4jgi PUTATIVE
UNCHARACTERIZED
PROTEIN

(Desulfitobacteri
um
hafniense)
5 / 12 ILE A 108
THR A  96
VAL A  97
VAL A 127
VAL A 182
COB  A 301 ( 4.1A)
None
None
None
None
1.21A 6bzoC-4jgiA:
undetectable
6bzoC-4jgiA:
11.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6F8C_A_STRA502_1
(CYTOCHROME P450
CYP260A1)
1bmt METHIONINE SYNTHASE
(Escherichia
coli)
4 / 6 ALA A 752
GLY A 834
THR A 837
ILE A 846
None
COB  A 122 (-3.6A)
None
None
0.89A 6f8cA-1bmtA:
0.0
6f8cA-1bmtA:
14.83