SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'BCD'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DED_A_QPSA2001_1
(CYCLODEXTRIN
GLUCANOTRANSFERASE)		 1z0n 5'-AMP-ACTIVATED
PROTEIN KINASE,
BETA-1 SUBUNIT
(Rattus
norvegicus) 		4 / 6 TRP A 100
LYS A 126
TRP A 133
ASN A 150
 BCD  A1200 (-3.8A)
BCD  A1200 (-2.7A)
BCD  A1200 ( 3.9A)
BCD  A1200 (-3.0A)
 0.40A 1dedA-1z0nA:
8.5		 1dedA-1z0nA:
9.98
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1MXD_A_ACRA732_1
(ALPHA AMYLASE)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		7 / 9 GLY A   9
LYS A 241
PRO A 278
GLU A 307
GLY A 308
GLY A 338
GLY A 339
 BCD  A 601 (-3.7A)
BCD  A 601 (-2.4A)
BCD  A 601 (-4.0A)
BCD  A 601 (-2.9A)
BCD  A 601 (-3.5A)
BCD  A 601 ( 3.7A)
BCD  A 601 (-3.5A)
 0.17A 1mxdA-3qgvA:
65.1		 1mxdA-3qgvA:
86.67
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1MXD_A_ACRA732_1
(ALPHA AMYLASE)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		5 / 9 LYS A 241
PRO A 278
GLU A 307
GLY A 308
GLY A 339
 BCD  A 601 (-2.4A)
BCD  A 601 (-4.0A)
BCD  A 601 (-2.9A)
BCD  A 601 (-3.5A)
BCD  A 601 (-3.5A)
 0.92A 1mxdA-3qgvA:
65.1		 1mxdA-3qgvA:
86.67
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1MXG_A_ACRA442_1
(ALPHA AMYLASE)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		9 / 11 GLY A   9
LYS A 241
PRO A 278
PHE A 279
GLU A 307
GLY A 308
GLN A 309
GLY A 338
GLY A 339
 BCD  A 601 (-3.7A)
BCD  A 601 (-2.4A)
BCD  A 601 (-4.0A)
BCD  A 601 (-4.6A)
BCD  A 601 (-2.9A)
BCD  A 601 (-3.5A)
BCD  A 601 ( 4.6A)
BCD  A 601 ( 3.7A)
BCD  A 601 (-3.5A)
 0.20A 1mxgA-3qgvA:
65.4		 1mxgA-3qgvA:
86.67
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1MXG_A_ACRA442_1
(ALPHA AMYLASE)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		6 / 11 LYS A 241
PRO A 278
GLU A 307
GLY A 308
GLN A 309
GLY A 339
 BCD  A 601 (-2.4A)
BCD  A 601 (-4.0A)
BCD  A 601 (-2.9A)
BCD  A 601 (-3.5A)
BCD  A 601 ( 4.6A)
BCD  A 601 (-3.5A)
 0.99A 1mxgA-3qgvA:
65.4		 1mxgA-3qgvA:
86.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AIA_B_SAMB206_0
(UPF0217 PROTEIN
MJ1640)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		4 / 5 SER A   4
LEU A 336
GLY A 338
GLU A 334
 None
None
BCD  A 601 ( 3.7A)
None
 1.04A 3aiaA-3qgvA:
undetectable
3aiaB-3qgvA:
undetectable		 3aiaA-3qgvA:
19.23
3aiaB-3qgvA:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BOG_C_DVAC10_0
(6.5 KDA GLYCINE-RICH
ANTIFREEZE PROTEIN)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		3 / 3 GLY A 363
GLY A 339
GLY A 357
 None
BCD  A 601 (-3.5A)
None
 0.39A 3bogC-3qgvA:
undetectable		 3bogC-3qgvA:
10.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BOG_D_DVAD10_0
(6.5 KDA GLYCINE-RICH
ANTIFREEZE PROTEIN)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		3 / 3 GLY A 363
GLY A 339
GLY A 357
 None
BCD  A 601 (-3.5A)
None
 0.40A 3bogD-3qgvA:
undetectable		 3bogD-3qgvA:
10.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UFN_A_ROCA401_1
(HIV-1 PROTEASE)		 3qgv ALPHA AMYLASE
(Pyrococcus
woesei) 		5 / 11 GLY A 338
VAL A  11
GLY A  10
GLY A   9
THR A 283
 BCD  A 601 ( 3.7A)
None
None
BCD  A 601 (-3.7A)
None
 0.73A 3ufnA-3qgvA:
undetectable		 3ufnA-3qgvA:
11.62