SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'B5U'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1AJ6_A_NOVA1_1
(GYRASE)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 9 ASN A  52
GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
THR A 169
 B5U  A1256 (-3.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 (-3.6A)
 0.62A 1aj6A-4b6cA:
22.6		 1aj6A-4b6cA:
46.82
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1KIJ_A_NOVA400_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		8 / 12 ASP A  55
GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
ARG A 141
THR A 169
 None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.33A 1kijA-4b6cA:
22.5		 1kijA-4b6cA:
35.25
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1KIJ_B_NOVB444_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		8 / 12 ASN A  52
GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.54A 1kijB-4b6cA:
22.9		 1kijB-4b6cA:
35.25
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1S14_A_NOVA1300_1
(TOPOISOMERASE IV
SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		5 / 12 ASN A  52
ASP A  55
GLU A  56
ARG A  82
ASP A 142
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.4A)
None
 1.46A 1s14A-4b6cA:
25.8		 1s14A-4b6cA:
43.35
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1S14_A_NOVA1300_1
(TOPOISOMERASE IV
SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		8 / 12 ASN A  52
ASP A  55
GLU A  56
ASP A  79
ARG A  82
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.43A 1s14A-4b6cA:
25.8		 1s14A-4b6cA:
43.35
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1S14_B_NOVB2300_1
(TOPOISOMERASE IV
SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		5 / 12 ASN A  52
ASP A  55
GLU A  56
ARG A  82
ASP A 142
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.4A)
None
 1.43A 1s14B-4b6cA:
24.9		 1s14B-4b6cA:
43.35
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1S14_B_NOVB2300_1
(TOPOISOMERASE IV
SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 12 ASN A  52
ASP A  55
GLU A  56
ASP A  79
ARG A  82
PRO A  85
ARG A 141
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.51A 1s14B-4b6cA:
24.9		 1s14B-4b6cA:
43.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LPS_A_NOVA901_1
(TOPOISOMERASE IV
SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		8 / 12 ASN A  52
ASP A  55
GLU A  56
ASP A  79
ARG A  82
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.35A 3lpsA-4b6cA:
23.9		 3lpsA-4b6cA:
25.39
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 11 ASN A  52
ASP A  55
GLU A  56
ASP A  79
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.70A 4urnA-4b6cA:
24.4		 4urnA-4b6cA:
46.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 11 ASP A  55
GLU A  56
ASP A  79
ARG A  82
PRO A  85
ARG A 141
THR A 169
 None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.86A 4urnA-4b6cA:
24.4		 4urnA-4b6cA:
46.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_B_NOVB2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 11 ASN A  52
ASP A  55
GLU A  56
ASP A  79
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.60A 4urnB-4b6cA:
25.7		 4urnB-4b6cA:
46.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_B_NOVB2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 11 GLU A  56
ASP A  79
ARG A  82
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.54A 4urnB-4b6cA:
25.7		 4urnB-4b6cA:
46.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_C_NOVC2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 11 ASN A  52
ASP A  55
GLU A  56
ASP A  79
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.59A 4urnC-4b6cA:
24.8		 4urnC-4b6cA:
46.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_C_NOVC2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 11 ASP A  55
GLU A  56
ASP A  79
ARG A  82
PRO A  85
ARG A 141
THR A 169
 None
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.75A 4urnC-4b6cA:
24.8		 4urnC-4b6cA:
46.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_A_NOVA2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 12 ASN A  52
GLU A  56
ASP A  79
ILE A  84
PRO A  85
ARG A 141
 B5U  A1256 (-3.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.55A 4uroA-4b6cA:
24.8		 4uroA-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_A_NOVA2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 12 GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
ARG A 141
 B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.39A 4uroA-4b6cA:
24.8		 4uroA-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_B_NOVB2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 12 ASN A  52
GLU A  56
ASP A  79
ILE A  84
PRO A  85
ARG A 141
 B5U  A1256 (-3.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.54A 4uroB-4b6cA:
24.9		 4uroB-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_B_NOVB2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 12 GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
ARG A 141
 B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.36A 4uroB-4b6cA:
24.9		 4uroB-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_C_NOVC2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 12 ASN A  52
GLU A  56
ASP A  79
ILE A  84
PRO A  85
ARG A 141
 B5U  A1256 (-3.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.59A 4uroC-4b6cA:
24.8		 4uroC-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_C_NOVC2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		6 / 12 GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
ARG A 141
 B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
 0.40A 4uroC-4b6cA:
24.8		 4uroC-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_D_NOVD2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 12 ASN A  52
GLU A  56
ASP A  79
ILE A  84
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.57A 4uroD-4b6cA:
24.6		 4uroD-4b6cA:
48.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_D_NOVD2000_1
(DNA GYRASE SUBUNIT B)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		7 / 12 GLU A  56
ASP A  79
ARG A  82
ILE A  84
PRO A  85
ARG A 141
THR A 169
 B5U  A1256 (-3.6A)
B5U  A1256 (-3.5A)
B5U  A1256 (-3.4A)
B5U  A1256 (-4.3A)
B5U  A1256 (-4.2A)
B5U  A1256 ( 4.4A)
B5U  A1256 (-3.6A)
 0.34A 4uroD-4b6cA:
24.6		 4uroD-4b6cA:
48.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5NY7_A_NCAA303_0
(AMIDASE)		 4b6c DNA GYRASE SUBUNIT B
(Mycolicibacteriu
m
smegmatis) 		4 / 6 ARG A  82
PRO A  85
THR A 169
GLU A  56
 B5U  A1256 (-3.4A)
B5U  A1256 (-4.2A)
B5U  A1256 (-3.6A)
B5U  A1256 (-3.6A)
 0.99A 5ny7A-4b6cA:
undetectable		 5ny7A-4b6cA:
21.36