SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'B5M'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3VN2_A_TLSA501_1 (PEROXISOME PROLIFERATOR-ACTIVAT ED RECEPTOR GAMMA)	5wm4	SALICYLATE-AMP LIGASE (Streptomyces gandocaensis)	5 / 12	PHE A 257 CYH A 261 SER A 235 TYR A 408 LEU A 209	B5M A 601 (-3.6A) B5M A 601 (-3.6A) None None None	1.24A	3vn2A-5wm4A: undetectable	3vn2A-5wm4A: 12.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4Z2E_H_TR6H101_1 (DNA GYRASE SUBUNIT A DNA GYRASE SUBUNIT B SYMMETRIZED E-SITE DNA)	5wm4	SALICYLATE-AMP LIGASE (Streptomyces gandocaensis)	3 / 5	GLY A 352 GLY A 356 GLU A 355	B5M A 601 (-3.8A) None B5M A 601 ( 4.8A)	0.41A	4z2eA-5wm4A: undetectable 4z2eD-5wm4A: undetectable	4z2eA-5wm4A: 9.40 4z2eD-5wm4A: 17.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	5WM2_A_SALA601_1 (SALICYLATE-AMP LIGASE)	5wm4	SALICYLATE-AMP LIGASE (Streptomyces gandocaensis)	6 / 9	HIS A 255 ASN A 256 CYH A 261 GLY A 327 GLY A 352 LEU A 358	B5M A 601 ( 4.8A) B5M A 601 (-3.9A) B5M A 601 (-3.6A) B5M A 601 (-3.6A) B5M A 601 (-3.8A) None	0.98A	5wm2A-5wm4A: 71.8	5wm2A-5wm4A: 100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	5WM2_A_SALA601_1 (SALICYLATE-AMP LIGASE)	5wm4	SALICYLATE-AMP LIGASE (Streptomyces gandocaensis)	9 / 9	HIS A 255 ASN A 256 PHE A 257 CYH A 261 GLY A 328 VAL A 350 GLY A 352 LEU A 358 LYS A 460	B5M A 601 ( 4.8A) B5M A 601 (-3.9A) B5M A 601 (-3.6A) B5M A 601 (-3.6A) B5M A 601 (-3.3A) B5M A 601 (-4.8A) B5M A 601 (-3.8A) None B5M A 601 (-3.0A)	0.19A	5wm2A-5wm4A: 71.8	5wm2A-5wm4A: 100.00

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["3VN2_A_TLSA501_1","PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA","5wm4","SALICYLATE-AMP LIGASE","Streptomyces gandocaensis",5,"PHE A 257;CYH A 261;SER A 235;TYR A 408;LEU A 209","B5M A 601 (-3.6A);B5M A 601 (-3.6A);None;None;None","1.24A","3vn2A-5wm4A:undetectable",null],["4Z2E_H_TR6H101_1","DNA GYRASE SUBUNIT A;DNA GYRASE SUBUNIT B;SYMMETRIZED E-SITE DNA","5wm4","SALICYLATE-AMP LIGASE","Streptomyces gandocaensis",3,"GLY A 352;GLY A 356;GLU A 355","B5M A 601 (-3.8A);None;B5M A 601 ( 4.8A)","0.41A","4z2eA-5wm4A:undetectable;4z2eD-5wm4A:undetectable","3vn2A-5wm4A:12.06"],["5WM2_A_SALA601_1","SALICYLATE-AMP LIGASE","5wm4","SALICYLATE-AMP LIGASE","Streptomyces gandocaensis",6,"HIS A 255;ASN A 256;CYH A 261;GLY A 327;GLY A 352;LEU A 358","B5M A 601 ( 4.8A);B5M A 601 (-3.9A);B5M A 601 (-3.6A);B5M A 601 (-3.6A);B5M A 601 (-3.8A);None","0.98A","5wm2A-5wm4A:71.8","4z2eA-5wm4A:9.40;4z2eD-5wm4A:17.47"],["5WM2_A_SALA601_1","SALICYLATE-AMP LIGASE","5wm4","SALICYLATE-AMP LIGASE","Streptomyces gandocaensis",9,"HIS A 255;ASN A 256;PHE A 257;CYH A 261;GLY A 328;VAL A 350;GLY A 352;LEU A 358;LYS A 460","B5M A 601 ( 4.8A);B5M A 601 (-3.9A);B5M A 601 (-3.6A);B5M A 601 (-3.6A);B5M A 601 (-3.3A);B5M A 601 (-4.8A);B5M A 601 (-3.8A);None;B5M A 601 (-3.0A)","0.19A","5wm2A-5wm4A:71.8","5wm2A-5wm4A:100.00"]]