SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'AF3'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KB9_A_PCFA514_0
(CYTOCHROME B
CYTOCHROME C1, HEME
PROTEIN
UBIQUINOL-CYTOCHROME
C REDUCTASE COMPLEX
CORE PROTEIN I
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
4jvs PUTATIVE
UNCHARACTERIZED
PROTEIN
RAS-RELATED PROTEIN
RAB-1A

(Legionella
drancourtii;
Homo
sapiens)
4 / 8 ILE B  76
VAL A 438
MET A 445
SER B  42
None
None
None
AF3  B 401 (-2.0A)
1.10A 1kb9A-4jvsB:
undetectable
1kb9C-4jvsB:
undetectable
1kb9D-4jvsB:
undetectable
1kb9E-4jvsB:
undetectable
1kb9A-4jvsB:
18.41
1kb9C-4jvsB:
17.16
1kb9D-4jvsB:
19.92
1kb9E-4jvsB:
20.20
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1RMT_A_ADNA1501_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
10 / 10 ASP A  46
PHE A  56
TYR A  70
LEU A  71
TRP A  77
THR A 112
GLY A 113
ARG A 114
THR A 192
TYR A 193
AF3  A 800 ( 3.7A)
None
None
None
None
AF3  A 800 (-3.6A)
AF3  A 800 (-3.5A)
None
None
None
0.31A 1rmtA-2hf7A:
33.9
1rmtA-2hf7A:
99.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1RMT_C_ADNC1503_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
8 / 8 ASP A  46
PHE A  56
TYR A  70
LEU A  71
TRP A  77
GLY A 113
ASP A 145
TYR A 193
AF3  A 800 ( 3.7A)
None
None
None
None
AF3  A 800 (-3.5A)
None
None
0.26A 1rmtC-2hf7A:
36.8
1rmtC-2hf7A:
99.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1RMT_D_ADND1504_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
8 / 8 ASP A  46
PHE A  56
TYR A  70
LEU A  71
TRP A  77
ASP A 145
THR A 192
TYR A 193
AF3  A 800 ( 3.7A)
None
None
None
None
None
None
None
0.44A 1rmtD-2hf7A:
36.7
1rmtD-2hf7A:
99.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2B25_A_SAMA601_0
(HYPOTHETICAL PROTEIN)
4jvs RAS-RELATED PROTEIN
RAB-1A

(Homo
sapiens)
5 / 12 THR B  43
GLY B  23
GLY B  21
GLY B  69
ASP B 127
MG  B 402 (-2.8A)
GDP  B 400 (-3.0A)
GDP  B 400 ( 3.5A)
AF3  B 401 (-3.7A)
GDP  B 400 (-2.8A)
1.02A 2b25A-4jvsB:
undetectable
2b25A-4jvsB:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2B25_A_SAMA601_0
(HYPOTHETICAL PROTEIN)
4m8n RAS-RELATED PROTEIN
RAP-1B

(Homo
sapiens)
5 / 12 THR E  35
GLY E  15
GLY E  13
GLY E  60
ASP E 119
MG  E 200 (-2.7A)
GDP  E 201 (-3.6A)
GDP  E 201 ( 3.1A)
AF3  E 202 (-3.3A)
GDP  E 201 (-2.8A)
1.03A 2b25A-4m8nE:
undetectable
2b25A-4m8nE:
20.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2B82_A_ADNA1001_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
10 / 10 PHE A  56
LYS A  60
GLU A  68
TYR A  70
LEU A  71
TRP A  77
GLY A 113
ASP A 145
THR A 192
TYR A 193
None
None
None
None
None
None
AF3  A 800 (-3.5A)
None
None
None
0.66A 2b82A-2hf7A:
36.6
2b82A-2hf7A:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2B82_B_ADNB1002_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
9 / 9 PHE A  56
LYS A  60
GLU A  68
TYR A  70
LEU A  71
TRP A  77
GLY A 113
THR A 192
TYR A 193
None
None
None
None
None
None
AF3  A 800 (-3.5A)
None
None
0.56A 2b82B-2hf7A:
37.1
2b82B-2hf7A:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2B8J_A_SPMA653_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
9 / 9 ASP A  46
PHE A  56
TRP A  57
LYS A  60
TYR A  70
GLY A 113
ASP A 145
THR A 192
TYR A 193
AF3  A 800 ( 3.7A)
None
None
None
None
AF3  A 800 (-3.5A)
None
None
None
0.46A 2b8jA-2hf7A:
37.0
2b8jA-2hf7A:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2B8J_B_ADNB331_1
(CLASS B ACID
PHOSPHATASE)
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli)
10 / 10 ASP A  46
SER A  53
PHE A  56
TYR A  70
LEU A  71
TRP A  77
GLY A 113
ARG A 114
THR A 192
TYR A 193
AF3  A 800 ( 3.7A)
None
None
None
None
None
AF3  A 800 (-3.5A)
None
None
None
0.23A 2b8jB-2hf7A:
34.4
2b8jB-2hf7A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BEX_F_PAUF248_0
(TYPE III
PANTOTHENATE KINASE)
4m8n PLEXINC1
INTRACELLULAR REGION
RAS-RELATED PROTEIN
RAP-1B

(Danio
rerio;
Homo
sapiens)
5 / 11 LYS E  16
THR E  35
ASN E 116
GLY E  12
ARG A 711
AF3  E 202 ( 3.1A)
MG  E 200 (-2.7A)
GDP  E 201 (-3.2A)
AF3  E 202 (-3.5A)
GDP  E 201 ( 2.9A)
1.40A 3bexE-4m8nE:
undetectable
3bexF-4m8nE:
undetectable
3bexE-4m8nE:
21.59
3bexF-4m8nE:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KO0_G_TFPG201_1
(PROTEIN S100-A4)
4jvs PUTATIVE
UNCHARACTERIZED
PROTEIN
RAS-RELATED PROTEIN
RAB-1A

(Homo
sapiens;
Legionella
drancourtii)
5 / 9 GLY B  69
GLY B  23
ILE B  41
MET A 445
PHE A 448
AF3  B 401 (-3.7A)
GDP  B 400 (-3.0A)
None
None
None
1.40A 3ko0F-4jvsB:
undetectable
3ko0G-4jvsB:
undetectable
3ko0F-4jvsB:
20.99
3ko0G-4jvsB:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KO0_R_TFPR201_1
(PROTEIN S100-A4)
4jvs PUTATIVE
UNCHARACTERIZED
PROTEIN
RAS-RELATED PROTEIN
RAB-1A

(Homo
sapiens;
Legionella
drancourtii)
5 / 10 GLY B  23
ILE B  41
MET A 445
PHE A 448
GLY B  69
GDP  B 400 (-3.0A)
None
None
None
AF3  B 401 (-3.7A)
1.34A 3ko0R-4jvsB:
undetectable
3ko0T-4jvsB:
undetectable
3ko0R-4jvsB:
20.99
3ko0T-4jvsB:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SXJ_A_SAMA258_0
(PUTATIVE
METHYLTRANSFERASE)
5c2k TRANSFORMING PROTEIN
RHOA,RAC
GTPASE-ACTIVATING
PROTEIN 1

(Homo
sapiens)
5 / 12 ARG A 247
GLN A  63
GLY A  12
GLY A  62
ASN A  94
GDP  A 503 ( 3.5A)
AF3  A 502 (-3.2A)
None
AF3  A 502 (-3.4A)
None
1.21A 3sxjA-5c2kA:
undetectable
3sxjA-5c2kA:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SXJ_B_SAMB258_0
(PUTATIVE
METHYLTRANSFERASE)
5c2k TRANSFORMING PROTEIN
RHOA,RAC
GTPASE-ACTIVATING
PROTEIN 1

(Homo
sapiens)
5 / 12 ARG A 247
GLN A  63
GLY A  12
GLY A  62
ASN A  94
GDP  A 503 ( 3.5A)
AF3  A 502 (-3.2A)
None
AF3  A 502 (-3.4A)
None
1.22A 3sxjB-5c2kA:
undetectable
3sxjB-5c2kA:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3T7S_B_SAMB300_0
(PUTATIVE
METHYLTRANSFERASE)
5c2k TRANSFORMING PROTEIN
RHOA,RAC
GTPASE-ACTIVATING
PROTEIN 1

(Homo
sapiens)
5 / 12 ARG A 247
GLN A  63
GLY A  12
GLY A  62
ASN A  94
GDP  A 503 ( 3.5A)
AF3  A 502 (-3.2A)
None
AF3  A 502 (-3.4A)
None
1.23A 3t7sB-5c2kA:
undetectable
3t7sB-5c2kA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3T7S_D_SAMD300_0
(PUTATIVE
METHYLTRANSFERASE)
5c2k TRANSFORMING PROTEIN
RHOA,RAC
GTPASE-ACTIVATING
PROTEIN 1

(Homo
sapiens)
5 / 12 ARG A 247
GLN A  63
GLY A  12
GLY A  62
ASN A  94
GDP  A 503 ( 3.5A)
AF3  A 502 (-3.2A)
None
AF3  A 502 (-3.4A)
None
1.21A 3t7sD-5c2kA:
undetectable
3t7sD-5c2kA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TBG_D_RTZD2_1
(CYTOCHROME P450 2D6)
4xpz RNA POLYMERASE II
SUBUNIT A C-TERMINAL
DOMAIN PHOSPHATASE

(Schizosaccharomy
ces
pombe)
5 / 9 PHE A 264
LEU A 171
VAL A 253
LEU A 230
ILE A 257
None
AF3  A 601 (-4.0A)
None
None
None
1.04A 3tbgD-4xpzA:
undetectable
3tbgD-4xpzA:
20.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V4T_H_ACTH503_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)
2ynm LIGHT-INDEPENDENT
PROTOCHLOROPHYLLIDE
REDUCTASE
IRON-SULFUR
ATP-BINDING PROTEIN

(Prochlorococcus
marinus)
4 / 7 ARG A 187
ALA A 184
ILE A 188
GLY A 154
None
None
None
AF3  A1299 (-3.5A)
0.85A 3v4tH-2ynmA:
undetectable
3v4tH-2ynmA:
23.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A3U_A_ACTA1358_0
(NADH:FLAVIN
OXIDOREDUCTASE/NADH
OXIDASE)
4m8n PLEXINC1
INTRACELLULAR REGION
RAS-RELATED PROTEIN
RAP-1B

(Danio
rerio;
Homo
sapiens)
5 / 9 PRO E  34
GLN E  63
ARG A 711
GLY E  12
VAL E  14
AF3  E 202 ( 4.3A)
AF3  E 202 (-3.5A)
GDP  E 201 ( 2.9A)
AF3  E 202 (-3.5A)
GDP  E 201 (-4.3A)
1.47A 4a3uA-4m8nE:
undetectable
4a3uA-4m8nE:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A3U_B_ACTB1358_0
(NADH:FLAVIN
OXIDOREDUCTASE/NADH
OXIDASE)
4m8n PLEXINC1
INTRACELLULAR REGION
RAS-RELATED PROTEIN
RAP-1B

(Danio
rerio;
Homo
sapiens)
5 / 7 PRO E  34
GLN E  63
ARG A 711
GLY E  12
VAL E  14
AF3  E 202 ( 4.3A)
AF3  E 202 (-3.5A)
GDP  E 201 ( 2.9A)
AF3  E 202 (-3.5A)
GDP  E 201 (-4.3A)
1.48A 4a3uB-4m8nE:
undetectable
4a3uB-4m8nE:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A3U_B_ACTB1358_0
(NADH:FLAVIN
OXIDOREDUCTASE/NADH
OXIDASE)
5c2k TRANSFORMING PROTEIN
RHOA,RAC
GTPASE-ACTIVATING
PROTEIN 1

(Homo
sapiens)
4 / 7 PRO A  36
GLN A  63
ARG A 247
GLY A  14
AF3  A 502 (-4.5A)
AF3  A 502 (-3.2A)
GDP  A 503 ( 3.5A)
AF3  A 502 (-3.3A)
0.90A 4a3uB-5c2kA:
undetectable
4a3uB-5c2kA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EHG_C_SAMC4001_0
(RNA-DIRECTED RNA
POLYMERASE NS5)
4m8n PLEXINC1
INTRACELLULAR REGION
RAS-RELATED PROTEIN
RAP-1B

(Danio
rerio;
Homo
sapiens)
5 / 12 GLY E  15
GLY E  60
GLY E  13
VAL A1004
ILE E  36
GDP  E 201 (-3.6A)
AF3  E 202 (-3.3A)
GDP  E 201 ( 3.1A)
None
None
0.97A 5ehgC-4m8nE:
undetectable
5ehgC-4m8nE:
19.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VCV_A_1N1A404_2
(MEMBRANE-ASSOCIATED
TYROSINE- AND
THREONINE-SPECIFIC
CDC2-INHIBITORY
KINASE)
4xpz RNA POLYMERASE II
SUBUNIT A C-TERMINAL
DOMAIN PHOSPHATASE

(Schizosaccharomy
ces
pombe)
4 / 5 VAL A 253
HIS A 177
LEU A 226
ASP A 172
None
None
None
AF3  A 601 ( 4.0A)
1.42A 5vcvA-4xpzA:
undetectable
5vcvA-4xpzA:
22.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VIM_B_SAMB301_0
(METHYLTRANSFERASE)
4m8n PLEXINC1
INTRACELLULAR REGION
RAS-RELATED PROTEIN
RAP-1B

(Danio
rerio;
Homo
sapiens)
5 / 12 GLY E  15
GLY E  60
GLY E  13
VAL A1004
ILE E  36
GDP  E 201 (-3.6A)
AF3  E 202 (-3.3A)
GDP  E 201 ( 3.1A)
None
None
0.95A 5vimB-4m8nE:
undetectable
5vimB-4m8nE:
20.14