PDB ID: 6y2e Macromolecule: REPLICASE POLYPROTEIN 1AB Source Organism: SARS-CoV-2 Gene names: 1a-1brep UniProt ID: P0DTD1 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '6y2e'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 4LMN_A_EUIA503_1 (DUAL SPECIFICITYMITOGEN-ACTIVATEDPROTEIN KINASEKINASE 1) | Cobimetinib | 5 / 12 | LEU A 208LEU A 287ILE A 281ASN A 277SER A 267 | 1.36A | 20.82 | None | ||
![]() | 3A51_E_VDYE6178_1 (VITAMIN DHYDROXYLASE) | Calcidiol | 5 / 12 | ASN A 214ILE A 259ALA A 260VAL A 247LEU A 250 | 1.42A | 20.79 | None | ||
![]() | 5HIE_B_P06B801_1 (SERINE/THREONINE-PROTEIN KINASE B-RAF) | Dabrafenib | 5 / 12 | VAL A 125ALA A 7PHE A 140PHE A 150GLY A 149 | 1.39A | 20.74 | None | ||
![]() | 4O8F_A_BRLA501_2 (PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR GAMMA) | Rosiglitazone | 4 / 5 | GLY A 23LEU A 27ILE A 43LEU A 89 | 1.00A | 21.86 | None | ||
![]() | 2LBD_A_REAA500_1 (RETINOIC ACIDRECEPTOR GAMMA) | Tretinoin | 5 / 12 | LEU A 287ILE A 281ARG A 279PHE A 219LEU A 250 | 1.53A | 21.01 | None | ||
![]() | 4A99_D_MIYD393_1 (TETX2 PROTEIN) | Minocycline | 4 / 5 | ILE A 106GLN A 110ILE A 200GLU A 290 | 1.61A | 23.29 | None | ||
![]() | 3L4D_D_TPFD490_1 (STEROL 14-ALPHADEMETHYLASE) | Fluconazole | 4 / 8 | ALA A 193ALA A 194THR A 135MET A 165 | 1.05A | 21.88 | None | ||
![]() | 4X1I_D_LOCD502_1 (TUBULIN BETA CHAIN) | Colchicine | 5 / 12 | LEU A 287LEU A 208LEU A 271ASN A 221ALA A 211 | 1.39A | 20.43 | None | ||
![]() | 1UPF_B_URFB999_1 (URACILPHOSPHORIBOSYLTRANSFERASE) | Fluorouracil | 5 / 7 | MET A 130ALA A 129ILE A 136ASP A 197PHE A 134 | 1.74A | 19.53 | None | ||
![]() | 1JHQ_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 8 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.54A | 21.64 | None | ||
![]() | 4UCK_A_SAMA2409_0 (RNA-DIRECTED RNAPOLYMERASE L) | S-Adenosylmethionine | 5 / 12 | THR A 26GLY A 146GLY A 29GLY A 120THR A 175 | 1.39A | 21.76 | None | ||
![]() | 1JHV_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 8 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.53A | 21.64 | None | ||
![]() | 6HU9_H_PCFH604_0 (CYTOCHROME B-C1COMPLEX SUBUNIT 8CYTOCHROME C OXIDASEPOLYPEPTIDE 5A,MITOCHONDRIAL) | Colfosceril palmitate | 5 / 8 | GLY A 174HIS A 163VAL A 171GLY A 149ALA A 129 | 1.67A | 14.9216.45 | None | ||
![]() | 1JHO_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.52A | 21.64 | None | ||
![]() | 6HCO_A_FY5A1003_0 (ATP-BINDING CASSETTESUB-FAMILY G MEMBER2) | Estrone sulfate | 5 / 11 | PHE A 294VAL A 303PHE A 8THR A 111ILE A 106 | 1.73A | 18.20 | None | ||
![]() | 3BJM_B_BJMB2_1 (DIPEPTIDYL PEPTIDASE4) | Saxagliptin | 5 / 12 | ARG A 298PHE A 291SER A 113VAL A 114ASN A 151 | 1.56A | 16.14 | None | ||
![]() | 5IKT_B_TLFB601_0 (PROSTAGLANDIN G/HSYNTHASE 2) | Tolfenamic Acid | 5 / 12 | VAL A 73VAL A 91LEU A 89VAL A 20GLY A 29 | 1.49A | 19.48 | None | ||
![]() | 3HEG_A_BAXA1_1 (MITOGEN-ACTIVATEDPROTEIN KINASE 14) | Sorafenib | 5 / 12 | VAL A 297VAL A 296ALA A 206GLU A 290ILE A 200 | 1.52A | 19.17 | None | ||
![]() | 5GTR_A_ESTA601_1 (ESTROGEN RECEPTOR) | Estradiol | 5 / 12 | LEU A 282ALA A 210MET A 264ILE A 259LEU A 253 | 1.39A | 21.78 | None | ||
![]() | 3MBH_B_PXLB400_1 (PUTATIVEPHOSPHOMETHYLPYRIMIDINE KINASE) | Pyridoxal | 5 / 12 | VAL A 212THR A 257GLN A 256TYR A 209VAL A 296 | 1.78A | 21.89 | None | ||
![]() | 4ACB_B_DXCB1473_0 (TRANSLATIONELONGATION FACTORSELB) | Deoxycholic Acid | 4 / 8 | ILE A 136GLY A 138GLN A 127ARG A 298 | 0.91A | 20.36 | None | ||
![]() | 3ASN_B_CHDB1085_0 (CYTOCHROME C OXIDASESUBUNIT 1CYTOCHROME C OXIDASESUBUNIT 2CYTOCHROME C OXIDASESUBUNIT 6A2) | Cholic Acid | 5 / 11 | MET A 17GLY A 29GLN A 19THR A 21GLY A 143 | 1.65A | 20.0820.1313.31 | None | ||
![]() | 3KEE_D_30BD500_1 (GENOME POLYPROTEIN) | Simeprevir | 5 / 12 | GLY A 138GLY A 170ARG A 131ALA A 194ASP A 197 | 1.24A | 23.55 | None | ||
![]() | 3UE4_B_DB8B601_1 (TYROSINE-PROTEINKINASE ABL1) | Bosutinib | 5 / 12 | LEU A 30VAL A 36GLY A 146LEU A 27PHE A 66 | 1.16A | 22.12 | None | ||
![]() | 5F9Z_A_HFGA702_0 (AMINOACYL-TRNASYNTHETASE) | Halofuginone | 5 / 12 | LEU A 177GLY A 174VAL A 86PHE A 140GLY A 143 | 1.49A | 20.12 | None | ||
![]() | 1QZZ_A_ACTA421_0 (ACLACINOMYCIN-10-HYDROXYLASE) | Acetic acid | 5 / 8 | TYR A 118GLY A 146GLY A 143LEU A 27SER A 147 | 1.68A | 22.28 | None | ||
![]() | 4U5J_B_RXTB601_1 (PROTO-ONCOGENETYROSINE-PROTEINKINASE SRC) | Ruxolitinib | 5 / 9 | LEU A 250VAL A 202ALA A 206TYR A 209LEU A 268 | 1.78A | 23.62 | None | ||
![]() | 1A4L_A_DCFA353_2 (ADENOSINE DEAMINASE) | Pentostatin | 4 / 5 | LEU A 32LEU A 30SER A 10LEU A 115 | 1.21A | 21.39 | None | ||
![]() | 1XWF_A_ADNA433_1 (ADENOSYLHOMOCYSTEINASE) | Adenosine | 5 / 12 | LEU A 27THR A 25ASP A 187LEU A 58MET A 49 | 1.59A | 21.59 | None | ||
![]() | 3KEE_A_30BA500_1 (GENOME POLYPROTEIN) | Simeprevir | 5 / 12 | GLY A 138GLY A 170ARG A 131ALA A 194ASP A 197 | 1.20A | 23.55 | None | ||
![]() | 1L4N_A_NIOA991_1 (NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.54A | 21.64 | None | ||
![]() | 6BEH_A_RPTA601_1 (SCAFFOLD PROTEIN D13) | Rifapentine | 5 / 10 | GLU A 290VAL A 157PHE A 140PHE A 8PHE A 150 | 1.62A | 22.06 | None | ||
![]() | 1L5L_A_NIOA991_1 (NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.54A | 21.64 | None | ||
![]() | 5C0O_H_SAMH301_1 (TRNA(ADENINE(58)-N(1))-METHYLTRANSFERASETRMI) | S-Adenosylmethionine | 4 / 5 | THR A 111GLY A 109GLU A 288ASP A 295 | 1.66A | 22.73 | None | ||
![]() | 1XOS_A_VIAA1_1 (CAMP-SPECIFIC3',5'-CYCLICPHOSPHODIESTERASE 4B) | Sildenafil | 5 / 12 | PHE A 294SER A 301GLN A 127PHE A 8ILE A 152 | 1.61A | 21.84 | None | ||
![]() | 1TT0_A_ACTA4901_0 (PYRANOSE OXIDASE) | Acetic acid | 4 / 6 | THR A 292GLN A 127PHE A 8ASN A 151 | 1.65A | 18.49 | None | ||
![]() | 3ELZ_A_CHDA150_0 (ILEAL BILEACID-BINDING PROTEIN) | Cholic Acid | 5 / 12 | GLN A 127ASN A 151PHE A 150VAL A 148LEU A 115 | 1.65A | 20.13 | None | ||
![]() | 2ZJ0_A_2FAA500_2 (ADENOSYLHOMOCYSTEINASE) | Fludarabine | 4 / 5 | GLN A 110THR A 111THR A 201LEU A 250 | 1.20A | 19.88 | None | ||
![]() | 6BED_C_RFPC601_1 (SCAFFOLD PROTEIN D13) | Rifampicin | 5 / 11 | GLU A 290VAL A 157PHE A 140GLN A 110PHE A 8 | 1.45A | 22.06 | None | ||
![]() | 2AA5_A_STRA301_1 (MINERALOCORTICOIDRECEPTOR) | Progesterone | 5 / 12 | ASN A 28LEU A 115ALA A 116SER A 123THR A 26 | 1.70A | 23.01 | None | ||
![]() | 1ZQ9_B_SAMB4001_0 (PROBABLEDIMETHYLADENOSINETRANSFERASE) | S-Adenosylmethionine | 6 / 12 | LEU A 287VAL A 212ASN A 221LEU A 220ILE A 259PHE A 223 | 1.77A | 20.19 | None | ||
![]() | 4KQI_A_NIOA403_1 (NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.49A | 21.64 | None | ||
![]() | 5I73_A_68PA701_1 (SODIUM-DEPENDENTSEROTONINTRANSPORTER) | Citalopram | 6 / 12 | ALA A 173TYR A 182PHE A 140LEU A 167GLY A 149VAL A 114 | 1.76A | 20.58 | None | ||
![]() | 5UHG_C_RFPC1201_1 (DNA-DIRECTED RNAPOLYMERASE SUBUNITBETA) | Rifampicin | 5 / 12 | ASP A 187HIS A 41ARG A 60ILE A 43ARG A 40 | 1.44A | 15.60 | None | ||
![]() | 5YK2_A_ERYA501_0 (PROBABLE CONSERVEDATP-BINDING PROTEINABC TRANSPORTER) | Erythromycin | 5 / 11 | GLU A 288ALA A 210ALA A 206ARG A 298VAL A 297 | 1.50A | 23.06 | None | ||
![]() | 4F4D_B_CHDB503_0 (FERROCHELATASE,MITOCHONDRIAL) | Cholic Acid | 4 / 8 | ILE A 152ARG A 298PRO A 122VAL A 114 | 1.56A | 21.28 | None | ||
![]() | 2R5P_B_MK1B902_1 (PROTEASE) | Indinavir | 6 / 12 | ASP A 295ASP A 289VAL A 202ILE A 200GLY A 109ILE A 106 | 1.78A | 16.43 | None | ||
![]() | 3HLW_B_CE3B302_2 (CTX-M-9EXTENDED-SPECTRUMBETA-LACTAMASE) | Cefotaxime | 3 / 3 | CYH A 16PRO A 96ASP A 33 | 1.78A | 20.63 | None | ||
![]() | 3R0L_D_ACTD127_0 (PHOSPHOLIPASE A2 CB) | Acetic acid | 4 / 5 | PHE A 140ILE A 136GLY A 149HIS A 163 | 1.75A | 17.26 | None | ||
![]() | 4ZPH_A_PRLA501_0 (ARYL HYDROCARBONRECEPTOR NUCLEARTRANSLOCATORENDOTHELIAL PASDOMAIN-CONTAININGPROTEIN 1) | Proflavine | 4 / 7 | ARG A 217VAL A 212TRP A 218LEU A 220 | 1.38A | 19.7522.45 | None | ||
![]() | 3UCJ_A_AZMA229_1 (CARBONIC ANHYDRASE) | Acetazolamide | 5 / 10 | ASP A 197GLY A 195ALA A 194ALA A 193THR A 169 | 1.41A | 21.02 | None | ||
![]() | 3MNP_A_DEXA784_1 (GLUCOCORTICOIDRECEPTOR) | Betamethasone | 5 / 12 | ASN A 231VAL A 204LEU A 268CYH A 265THR A 225 | 1.67A | 22.15 | None | ||
![]() | 3L4D_A_TPFA490_1 (STEROL 14-ALPHADEMETHYLASE) | Fluconazole | 4 / 8 | ALA A 193ALA A 194THR A 135MET A 165 | 1.06A | 21.88 | None | ||
![]() | 2X9G_A_LYAA1270_2 (PTERIDINE REDUCTASE) | Pemetrexed | 3 / 3 | MET A 6VAL A 157GLU A 14 | 1.45A | 23.03 | None | ||
![]() | 3OXW_B_017B200_2 (HIV-1 PROTEASE) | Darunavir | 5 / 10 | ASP A 176VAL A 104GLY A 149VAL A 114ILE A 106 | 1.48A | 17.83 | None | ||
![]() | 3CE6_A_ADNA500_2 (ADENOSYLHOMOCYSTEINASE) | Adenosine | 4 / 5 | GLN A 110THR A 111THR A 201LEU A 250 | 1.28A | 19.92 | None | ||
![]() | 1JHY_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.53A | 21.64 | None | ||
![]() | 2QD3_A_CHDA502_0 (FERROCHELATASE) | Cholic Acid | 4 / 8 | PRO A 122SER A 121VAL A 13GLY A 15 | 1.63A | 21.28 | None | ||
![]() | 5I75_A_68PA701_1 (SODIUM-DEPENDENTSEROTONINTRANSPORTER) | Citalopram | 6 / 12 | ALA A 173TYR A 182PHE A 140LEU A 167GLY A 149VAL A 114 | 1.75A | 20.58 | None | ||
![]() | 1L5K_A_NIOA991_1 (NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.53A | 21.64 | None | ||
![]() | 1CBS_A_REAA200_1 (CELLULAR RETINOICACID BINDING PROTEINTYPE II) | Tretinoin | 5 / 12 | LEU A 167ILE A 136ALA A 173THR A 175TYR A 54 | 1.29A | 19.61 | None | ||
![]() | 5I71_A_68PA701_1 (SODIUM-DEPENDENTSEROTONINTRANSPORTER) | Citalopram | 6 / 12 | ALA A 173TYR A 182PHE A 140LEU A 167GLY A 149VAL A 114 | 1.73A | 20.58 | None | ||
![]() | 2OAX_D_SNLD4001_2 (MINERALOCORTICOIDRECEPTOR) | Spironolactone | 4 / 5 | LEU A 87LEU A 57CYH A 85THR A 175 | 1.75A | 22.60 | None | ||
![]() | 5L5F_H_BO2H301_1 (PROTEASOME SUBUNITBETA TYPE-2PROTEASOME SUBUNITBETA TYPE-3) | Bortezomib | 5 / 12 | CYH A 128ALA A 173GLY A 174THR A 175CYH A 160 | 1.61A | 19.6921.82 | None | ||
![]() | 2AA5_B_STRB302_1 (MINERALOCORTICOIDRECEPTOR) | Progesterone | 5 / 12 | ASN A 28LEU A 115ALA A 116SER A 123THR A 26 | 1.71A | 23.01 | None | ||
![]() | 5M0I_B_ACTB303_0 (SWI5-DEPENDENT HOEXPRESSION PROTEIN 2) | Acetic acid | 4 / 5 | VAL A 171THR A 135ASN A 133ASP A 197 | 1.53A | 23.15 | None | ||
![]() | 1JHA_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 8 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.50A | 21.64 | None | ||
![]() | 1D4F_B_ADNB602_2 (S-ADENOSYLHOMOCYSTEINE HYDROLASE) | Adenosine | 4 / 5 | THR A 198THR A 199THR A 292HIS A 246 | 1.49A | 21.36 | None | ||
![]() | 2VMY_B_GLYB502_0 (SERINEHYDROXYMETHYLTRANSFERASE) | Glycine | 4 / 8 | TYR A 126SER A 139HIS A 163SER A 144 | 1.47A | 21.55 | None | ||
![]() | 3OND_A_ADNA506_2 (ADENOSYLHOMOCYSTEINASE) | Adenosine | 3 / 3 | GLN A 110THR A 111LEU A 250 | 0.68A | 20.52 | None | ||
![]() | 1D0V_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 8 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.52A | 21.64 | None | ||
![]() | 1JHR_A_NIOA991_1 (NICOTINATEMONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.52A | 21.64 | None | ||
![]() | 1L5M_A_NIOA991_1 (NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLEPHOSPHORIBOSYLTRANSFERASE) | Niacin | 5 / 9 | THR A 26GLY A 146LEU A 27SER A 147GLY A 29 | 1.54A | 21.64 | None | ||
![]() | 1V54_B_CHDB4085_0 (CYTOCHROME C OXIDASEPOLYPEPTIDE ICYTOCHROME C OXIDASEPOLYPEPTIDE IICYTOCHROME C OXIDASEPOLYPEPTIDEVIA-HEART) | Cholic Acid | 5 / 11 | MET A 17GLY A 29GLN A 19THR A 21GLY A 143 | 1.61A | 20.0820.1313.31 | None | ||
![]() | 5MO4_A_NILA601_2 (TYROSINE-PROTEINKINASE ABL1) | Nilotinib | 6 / 12 | VAL A 296ILE A 213VAL A 212ILE A 259PHE A 3LEU A 220 | 1.74A | 21.98 | None | ||
![]() | 3FXR_A_ASCA3001_0 (LYSR TYPE REGULATOROF TSAMBCD) | Vitamin C | 4 / 8 | ARG A 298ILE A 152ASN A 151PRO A 9 | 1.35A | 19.59 | None | ||
![]() | 4G5J_A_0WMA1103_1 (EPIDERMAL GROWTHFACTOR RECEPTOR) | Afatinib | 4 / 5 | ASN A 65ARG A 60HIS A 80LEU A 87 | 1.79A | 21.74 | None | ||
![]() | 1Q23_E_FUAE706_1 (CHLORAMPHENICOLACETYLTRANSFERASE) | Fusidic Acid | 5 / 10 | THR A 111PHE A 8PHE A 3VAL A 303PHE A 305 | 1.68A | 23.48 | None | ||
![]() | 5YW0_A_ACTA411_0 (UNCHARACTERIZEDPROTEIN KDOO) | Acetic acid | 3 / 3 | LYS A 61LEU A 57ARG A 60 | 1.57A | 24.71 | None | ||
![]() | 1A4L_C_DCFC1353_2 (ADENOSINE DEAMINASE) | Pentostatin | 4 / 5 | LEU A 32LEU A 30SER A 10LEU A 115 | 1.26A | 21.39 | None | ||
![]() | 3KEE_C_30BC500_1 (GENOME POLYPROTEIN) | Simeprevir | 5 / 12 | GLY A 138GLY A 170ARG A 131ALA A 194ASP A 197 | 1.24A | 23.55 | None | ||
![]() | 2FR3_A_REAA300_1 (CELLULAR RETINOICACID BINDING PROTEIN2) | Tretinoin | 5 / 12 | LEU A 167ILE A 136ALA A 173THR A 175TYR A 54 | 1.28A | 19.61 | None | ||
![]() | 5ECL_A_ILEA602_0 (JASMONIC ACID-AMIDOSYNTHETASE JAR1) | L-Isoleucine | 4 / 6 | ALA A 94THR A 93VAL A 91VAL A 73 | 1.47A | 20.00 | None |