PDB ID: 6xip


Macromolecule:
NSP8


Source Organism:
SARS-CoV-2


Gene names:
-


UniProt ID:
-

SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '6xip'

1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.
2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).
3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.


DrReposER ID / Desc. Drug Res.
Matches
View Interface RMSD Seq.
Identity (%)
HETATM Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WDM_A_ADNA901_1
(4-PHOSPHOPANTOATE--B
ETA-ALANINE LIGASE)
Adenosine5 / 9
GLY D 113
LEU C  60
ASN C  69
ASN D 109
ILE D 106
1.50A19.08
None
None
None
EDO  D 202 (-3.6A)
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5T8H_B_478B401_1
(PROTEASE)
Amprenavir5 / 12
LEU D 103
ALA D 150
VAL D 130
ILE D 119
ILE D 106
0.94A19.05
None
EDO  D 201 (-3.7A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIW_B_LOCB504_1
(TUBULIN ALPHA-1B
CHAIN
TUBULIN BETA CHAIN)
Colchicine3 / 3
SER C  26
ALA C  30
VAL C  33
1.24A11.50
None
EDO  C 101 (-3.5A)
EDO  C 101 ( 4.4A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5N8J_E_DVAE7_0
(GLY-DTY-GLY-DLE-DAL-
DSG-DVA-DAS-DGL-DSN-
DSN-GLY
STREPTAVIDIN)
L-Valine3 / 3
TYR D 138
SER D 173
TRP D 182
1.06A20.97
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DF7_A_MTXA501_1
(DIHYDROFOLATE
REDUCTASE)
Methotrexate5 / 12
ILE D 106
ALA D 110
LEU D  91
VAL C  16
LEU C  13
1.17A17.72
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3E22_B_LOCB700_1
(TUBULIN ALPHA-1C
CHAIN
TUBULIN BETA-2B
CHAIN)
Colchicine3 / 3
SER C  26
ALA C  30
VAL C  33
0.96A11.08
None
EDO  C 101 (-3.5A)
EDO  C 101 ( 4.4A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FT9_A_CHDA131_0
(FATTY ACID-BINDING
PROTEIN 2, LIVER)
Cholic Acid5 / 11
LEU C  13
LEU C  17
ILE D 106
MET C  62
LEU C  71
1.40A21.01
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZV2_A_LEVA801_2
(FIBROBLAST GROWTH
FACTOR RECEPTOR 1)
Lenvatinib3 / 3
LYS B  79
LEU D 153
ASP D 143
1.17A18.42
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NYR_B_SVRB401_1
(NAD-DEPENDENT
DEACETYLASE
SIRTUIN-5)
Suramin5 / 12
ALA D 126
ALA D 152
ALA D 150
TYR D 149
LEU C  35
1.50A16.61
None
EDO  D 201 ( 4.0A)
EDO  D 201 (-3.7A)
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VC0_A_RITA602_1
(CYTOCHROME P450 3A4)
Ritonavir5 / 12
LEU B 103
ILE A  39
PHE A  49
ALA A  48
ALA A   0
1.23A12.88
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BYO_A_LNLA1217_1
(LIPOPROTEIN LPPX)
Alpha-Linolenic Acid4 / 4
VAL A  66
LEU A  28
ILE B 119
LEU A  55
1.44A19.29
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HD4_A_STIA604_0
(TYROSINE-PROTEIN
KINASE ABL1)
Imatinib5 / 12
ILE D 132
VAL D 115
LEU C  60
ALA D 110
ASP D 112
1.24A18.15
None
None
None
None
EDO  D 202 (-4.1A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FBM_B_RTLB951_2
(PROTEIN (CARTILAGE
OLIGOMERIC MATRIX
PROTEIN))
Vitamin A4 / 4
THR C   9
LEU C  13
VAL C  16
LEU C  20
0.39A23.75
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1W0G_A_MYTA1499_1
(CYTOCHROME P450 3A4)
Metyrapone4 / 6
SER C  57
ILE D 119
THR D 123
ALA D 194
1.48A12.28
None
None
None
EDO  D 201 (-3.4A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YVN_A_ACTA305_0
(GLUTATHIONE
S-TRANSFERASE
OMEGA-1)
Acetic acid4 / 6
LEU C  71
GLN D  88
LEU C  13
LEU C  59
1.42A16.09
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1XDK_B_9CRB600_1
(RETINOIC ACID
RECEPTOR, BETA)
Alitretinoin5 / 12
ALA C  65
LEU C  17
LEU C  20
LEU C  28
LEU C  59
1.11A15.56
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1PBK_A_RAPA225_1
(FKBP25)
Sirolimus5 / 12
GLY B 113
VAL B 131
ILE B 132
ALA B 188
ILE B 156
1.18A17.21
None
None
None
None
EDO  B 202 ( 4.6A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UVV_B_9CRB501_1
(RETINOIC ACID
RECEPTOR RXR-ALPHA)
Alitretinoin5 / 12
ALA D 152
ALA D 150
VAL D 186
ILE D 132
CYH D 114
1.34A18.03
EDO  D 201 ( 4.0A)
EDO  D 201 (-3.7A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E0F_A_RBFA301_2
(RIBOFLAVIN SYNTHASE
SUBUNIT ALPHA)
Riboflavin3 / 3
LYS D 127
THR D 187
ILE D 166
1.20A19.51
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3Q70_A_RITA2001_2
(CANDIDAPEPSIN-2)
Ritonavir4 / 6
THR C  46
ILE D 120
ASP D 101
THR C  45
1.43A14.64
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2RKG_B_AB1B501_2
(PROTEASE RETROPEPSIN)
Lopinavir5 / 12
LEU B 103
ALA B 150
VAL B 130
ILE B 119
ILE B 106
0.94A17.69
None
EDO  B 201 (-3.6A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A9K_A_TYLA2200_1
(CREB-BINDING PROTEIN)
Acetaminophen4 / 6
VAL D 130
LEU D 128
ILE D 120
ASN D 105
1.15A28.26
None
None
None
EDO  D 202 (-4.2A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1TDR_A_MTXA170_2
(TELLUROMETHIONYL
DIHYDROFOLATE
REDUCTASE)
Methotrexate3 / 3
SER C  61
ILE D 185
THR D 137
1.35A17.83
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FBM_B_RTLB951_3
(PROTEIN (CARTILAGE
OLIGOMERIC MATRIX
PROTEIN))
Vitamin A4 / 5
THR A   9
LEU A  13
VAL A  16
LEU A  20
0.63A23.75
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E5K_B_017B201_1
(HIV-1 PROTEASE)
Darunavir5 / 12
LEU D 103
ALA D 150
VAL D 130
ILE D 119
ILE D 106
0.89A19.05
None
EDO  D 201 (-3.7A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W68_A_VIVA301_0
(ALPHA-TOCOPHEROL
TRANSFER PROTEIN)
Vitamin E6 / 12
VAL A  53
SER A  57
LEU A  60
SER A  61
LEU A  17
VAL A  22
1.37A16.41
EDO  B 201 ( 4.7A)
None
None
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3S54_B_017B201_2
(PROTEASE)
Darunavir5 / 12
LEU D 103
ALA D 150
VAL D 130
ILE D 119
ILE D 106
0.93A19.05
None
EDO  D 201 (-3.7A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A9K_A_TYLA2200_1
(CREB-BINDING PROTEIN)
Acetaminophen4 / 6
VAL B 130
LEU B 128
ILE B 120
ASN B 105
1.20A28.26
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIW_B_LOCB504_1
(TUBULIN ALPHA-1B
CHAIN
TUBULIN BETA CHAIN)
Colchicine3 / 3
SER C  25
ALA C  30
VAL C  33
1.08A11.50
None
EDO  C 101 (-3.5A)
EDO  C 101 ( 4.4A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1W0G_A_MYTA1499_1
(CYTOCHROME P450 3A4)
Metyrapone4 / 6
ILE C  39
ALA C  48
THR C  46
ALA D 194
1.48A12.28
None
None
None
EDO  D 201 (-3.4A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1OPJ_A_STIA3_1
(PROTO-ONCOGENE
TYROSINE-PROTEIN
KINASE ABL1)
Imatinib5 / 12
ILE D 132
VAL D 115
LEU C  60
ALA D 110
ASP D 112
1.22A18.15
None
None
None
None
EDO  D 202 (-4.1A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1W0G_A_MYTA1499_1
(CYTOCHROME P450 3A4)
Metyrapone4 / 6
SER A  57
ILE B 119
THR B 123
ALA B 152
1.43A12.28
None
None
None
EDO  B 201 ( 4.0A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VC0_A_RITA602_1
(CYTOCHROME P450 3A4)
Ritonavir5 / 12
LEU D 103
ILE C  39
PHE C  49
ALA C  48
ALA C   0
1.47A12.88
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QEU_A_ACTA141_0
(PUTATIVE
CARBOXYMUCONOLACTONE
DECARBOXYLASE)
Acetic acid3 / 3
VAL B 167
ASP B 161
GLU B 171
1.34A21.19
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1PBK_A_RAPA225_1
(FKBP25)
Sirolimus5 / 12
GLY D 113
VAL D 131
ILE D 132
ALA D 188
ILE D 156
1.17A17.21
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2RKG_B_AB1B501_2
(PROTEASE RETROPEPSIN)
Lopinavir5 / 12
LEU D 103
ALA D 150
VAL D 130
ILE D 119
ILE D 106
0.91A17.69
None
EDO  D 201 (-3.7A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5T8H_B_478B401_1
(PROTEASE)
Amprenavir5 / 12
LEU B 103
ALA B 150
VAL B 130
ILE B 119
ILE B 106
0.95A19.05
None
EDO  B 201 (-3.6A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DB1_A_VDXA428_2
(VITAMIN D NUCLEAR
RECEPTOR)
Calcitriol4 / 6
ILE D 156
TRP D 154
TYR D 149
VAL D 160
1.38A18.10
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FBM_B_RTLB951_3
(PROTEIN (CARTILAGE
OLIGOMERIC MATRIX
PROTEIN))
Vitamin A4 / 5
THR C   9
LEU C  13
VAL C  16
LEU C  20
0.60A23.75
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HCX_A_ZMRA519_1
(NEURAMINIDASE)
Zanamivir3 / 3
TRP D 154
ILE D 120
GLU C  50
1.14A17.29
None
None
EDO  D 201 ( 4.6A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6AZ3_1_PAR11803_1
(RRNA ALPHA
RIBOSOMAL PROTEIN
EL18)
Paromomycin3 / 3
SER A   1
LYS A   2
SER A   4
1.19A17.62
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1OPJ_A_STIA3_1
(PROTO-ONCOGENE
TYROSINE-PROTEIN
KINASE ABL1)
Imatinib5 / 12
ILE B 132
VAL B 115
LEU A  60
ALA B 110
ASP B 112
1.20A18.15
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E5K_B_017B201_1
(HIV-1 PROTEASE)
Darunavir5 / 12
LEU B 103
ALA B 150
VAL B 130
ILE B 119
ILE B 106
0.92A19.05
None
EDO  B 201 (-3.6A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WDM_A_ADNA901_1
(4-PHOSPHOPANTOATE--B
ETA-ALANINE LIGASE)
Adenosine5 / 9
GLY B 113
LEU A  60
ASN A  69
ASN B 109
ILE B 106
1.49A19.08
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XI3_A_29SA601_2
(ESTROGEN RECEPTOR)
Bazedoxifene3 / 3
LEU D  91
ILE C  68
LEU C  60
0.72A18.29
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2DTJ_A_THRA401_0
(ASPARTOKINASE)
L-Threonine4 / 8
GLY B 113
ALA B 110
ASN A  69
ILE A  68
1.08A20.99
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1W0G_A_MYTA1499_1
(CYTOCHROME P450 3A4)
Metyrapone4 / 6
ILE A  39
ALA A  48
THR A  46
ALA B 102
1.50A12.28
None
None
None
EDO  B 201 ( 4.2A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HD4_A_STIA604_0
(TYROSINE-PROTEIN
KINASE ABL1)
Imatinib5 / 12
ILE B 132
VAL B 115
LEU A  60
ALA B 110
ASP B 112
1.22A18.15
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QEU_A_ACTA141_0
(PUTATIVE
CARBOXYMUCONOLACTONE
DECARBOXYLASE)
Acetic acid3 / 3
VAL D 167
ASP D 161
GLU D 171
1.38A21.19
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1LIN_A_TFPA153_1
(CALMODULIN)
Trifluoperazine4 / 8
LEU C  40
GLU C  47
ALA C  48
VAL C   6
1.46A20.45
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HCX_A_ZMRA519_1
(NEURAMINIDASE)
Zanamivir3 / 3
TRP B 154
ILE B 120
GLU A  50
1.12A17.29
None
None
EDO  B 201 ( 4.5A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3Q70_A_RITA2001_2
(CANDIDAPEPSIN-2)
Ritonavir4 / 6
THR A  46
ILE B 120
ASP B 101
THR A  45
1.48A14.64
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CSW_A_P06A801_2
(SERINE/THREONINE-PRO
TEIN KINASE B-RAF)
Dabrafenib3 / 3
PHE B  92
ILE B 107
ASP B  99
0.85A18.38
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CSW_A_P06A801_2
(SERINE/THREONINE-PRO
TEIN KINASE B-RAF)
Dabrafenib3 / 3
PHE D  92
ILE D 107
ASP D  99
0.88A18.38
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UVV_B_9CRB501_1
(RETINOIC ACID
RECEPTOR RXR-ALPHA)
Alitretinoin5 / 12
ALA B 152
ALA B 150
VAL B 186
ILE B 132
CYH B 114
1.30A18.03
EDO  B 201 ( 4.0A)
EDO  B 201 (-3.6A)
None
None
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MRQ_A_STRA501_1
(ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C1)
Progesterone5 / 11
LEU C  59
VAL C  66
ILE C  68
LEU D 103
LEU D  95
1.49A15.81
None
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1W0G_A_MYTA1499_1
(CYTOCHROME P450 3A4)
Metyrapone4 / 6
ILE C  39
ALA C  48
THR C  46
ALA D 102
1.49A12.28
None
None
None
EDO  D 201 ( 4.4A)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FBM_B_RTLB951_2
(PROTEIN (CARTILAGE
OLIGOMERIC MATRIX
PROTEIN))
Vitamin A4 / 4
THR A   9
LEU A  13
VAL A  16
LEU A  20
0.41A23.75
None