PDB ID: 5r83 Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARS-CoV-2 Gene names: 1a-1brep UniProt ID: P0DTD1 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '5r83'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
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![]() | 6F6I_A_8PRA509_1 (ENVELOPEGLYCOPROTEIN,GP,GP1ENVELOPEGLYCOPROTEIN) | Paroxetine | 6 / 12 | VAL A 204LEU A 287LEU A 242LEU A 272THR A 198LEU A 268 | 1.59A | 21.4119.48 | None | ||
![]() | 6F5U_A_CQNA610_1 (ENVELOPEGLYCOPROTEIN,ENVELOPE GLYCOPROTEIN,GP1ENVELOPEGLYCOPROTEIN) | Bepridil | 6 / 10 | VAL A 204LEU A 205LEU A 242LEU A 272THR A 198LEU A 268 | 1.46A | 19.4619.48 | None | ||
![]() | 1MMT_A_H4BA1426_1 (PHENYLALANINE-4-HYDROXYLASE) | Sapropterin | 5 / 11 | LEU A 286LEU A 287SER A 284LEU A 282THR A 199 | 1.65A | 21.13 | None | ||
![]() | 6BXL_B_SAMB401_0 (2-(3-AMINO-3-CARBOXYPROPYL)HISTIDINESYNTHASE) | S-Adenosylmethionine | 5 / 12 | GLY A 138HIS A 172SER A 10VAL A 13VAL A 148 | 1.28A | 19.70 | NoneNoneNoneNone CL A1007 (-3.7A) | ||
![]() | 3H52_C_486C4_1 (GLUCOCORTICOIDRECEPTOR) | Mifepristone | 5 / 12 | LEU A 282GLY A 215LEU A 220PHE A 219MET A 264 | 1.63A | 21.45 | None | ||
![]() | 5C0O_F_SAMF301_0 (TRNA(ADENINE(58)-N(1))-METHYLTRANSFERASETRMI) | S-Adenosylmethionine | 5 / 12 | GLY A 174GLY A 183HIS A 164ASP A 176LEU A 177 | 1.18A | 22.73 | NoneNone CL A1005 ( 3.9A)NoneNone | ||
![]() | 4E7C_D_ACTD504_0 (UDP-N-ACETYLGLUCOSAMINE1-CARBOXYVINYLTRANSFERASE) | Acetic acid | 3 / 3 | GLY A 283SER A 284TRP A 207 | 1.62A | 22.74 | None | ||
![]() | 2W3B_A_FOLA401_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ILE A 200LEU A 272PHE A 230LEU A 250THR A 198 | 1.44A | 19.16 | None | ||
![]() | 2NYR_B_SVRB401_3 (NAD-DEPENDENTDEACETYLASESIRTUIN-5) | Suramin | 5 / 12 | TYR A 126ILE A 136HIS A 163GLY A 143MET A 49 | 1.54A | 21.78 | NoneNoneK0G A1001 (-4.0A)NoneK0G A1001 (-4.6A) | ||
![]() | 4L4D_A_CAMA503_0 (CAMPHOR5-MONOOXYGENASE) | Camphor | 5 / 8 | PHE A 103TYR A 101THR A 98VAL A 35VAL A 148 | 1.80A | 19.95 | NoneNoneNoneNone CL A1007 (-3.7A) | ||
![]() | 5AYF_A_SAMA401_0 (HISTONE-LYSINEN-METHYLTRANSFERASESETD7) | S-Adenosylmethionine | 5 / 11 | ILE A 136GLY A 138GLY A 143ASN A 142HIS A 164 | 1.49A | 20.42 | NoneNoneNoneK0G A1001 (-4.0A) CL A1005 ( 3.9A) | ||
![]() | 6HU9_T_PCFT101_0 (CYTOCHROME B-C1COMPLEX SUBUNIT 1,MITOCHONDRIALCYTOCHROME B-C1COMPLEX SUBUNIT 9CYTOCHROME B-C1COMPLEX SUBUNITRIESKE,MITOCHONDRIAL) | Colfosceril palmitate | 5 / 10 | ASP A 92VAL A 73GLY A 71SER A 121VAL A 18 | 1.77A | 24.6419.2112.98 | None | ||
![]() | 4JLG_A_SAMA401_0 (HISTONE-LYSINEN-METHYLTRANSFERASESETD7) | S-Adenosylmethionine | 5 / 12 | ILE A 136GLY A 138GLY A 143ASN A 142HIS A 164 | 1.49A | 19.08 | NoneNoneNoneK0G A1001 (-4.0A) CL A1005 ( 3.9A) | ||
![]() | 2W3M_A_FOLA1188_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ILE A 200LEU A 272PHE A 230LEU A 250THR A 198 | 1.38A | 19.16 | None | ||
![]() | 5VOO_E_C2FE3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLY A 138VAL A 86LEU A 177GLY A 146SER A 144 | 1.43A | 22.26 | NoneNoneNoneNoneK0G A1001 ( 4.1A) | ||
![]() | 2W3B_B_FOLB401_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ILE A 200LEU A 272PHE A 230LEU A 250THR A 198 | 1.41A | 19.16 | None | ||
![]() | 2IT4_A_PPFA500_1 (CARBONIC ANHYDRASE 1) | Foscarnet | 4 / 8 | HIS A 172HIS A 163ALA A 116LEU A 141 | 1.02A | 22.01 | NoneK0G A1001 (-4.0A)NoneNone | ||
![]() | 3IJD_A_C2FA314_0 (UNCHARACTERIZEDPROTEIN) | Levomefolic acid | 5 / 12 | LEU A 87GLY A 79LEU A 58ILE A 59GLU A 55 | 1.35A | 21.35 | None | ||
![]() | 4KEB_B_FOLB202_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ILE A 200LEU A 272PHE A 230LEU A 250THR A 198 | 1.38A | 17.82 | None | ||
![]() | 2QBN_A_CAMA442_0 (CYTOCHROME P450-CAM) | Camphor | 5 / 7 | PHE A 103TYR A 101THR A 98VAL A 36VAL A 148 | 1.74A | 21.30 | NoneNoneNoneNone CL A1007 (-3.7A) | ||
![]() | 1U1J_A_C2FA773_0 (5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINEMETHYLTRANSFERASE) | Levomefolic acid | 4 / 8 | ASN A 63HIS A 64SER A 62ARG A 60 | 1.46A | 17.49 | None | ||
![]() | 2JN3_A_JN3A130_1 (FATTY ACID-BINDINGPROTEIN, LIVER) | Ursodeoxycholic acid | 5 / 12 | LEU A 208LEU A 282ALA A 210ILE A 213ASP A 216 | 1.51A | 17.79 | None | ||
![]() | 4M6K_A_FOLA201_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ILE A 200LEU A 272PHE A 230LEU A 250THR A 198 | 1.41A | 19.16 | None | ||
![]() | 1AO8_A_MTXA170_1 (DIHYDROFOLATEREDUCTASE) | Methotrexate | 5 / 12 | LEU A 167ALA A 191PHE A 185ALA A 194THR A 190 | 1.44A | 20.07 | NoneNone CL A1008 (-4.6A) CL A1008 (-3.6A)None | ||
![]() | 2FCN_B_DVAB35_0 (UBIQUITIN) | L-Valine | 4 / 6 | ARG A 131LEU A 286GLU A 290ILE A 200 | 1.74A | 14.19 | None | ||
![]() | 4PXM_B_ESTB2000_1 (ESTROGEN RECEPTOR) | Estradiol | 5 / 11 | LEU A 30LEU A 177ILE A 136GLY A 174HIS A 163 | 1.70A | 21.27 | NoneNoneNoneNoneK0G A1001 (-4.0A) | ||
![]() | 3RHW_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.53A | 23.59 | None | ||
![]() | 1RUK_L_ACTL611_0 (IMMUNOGLOBULINIGG2A, HEAVY CHAINIMMUNOGLOBULINIGG2A, LIGHT CHAIN) | Acetic acid | 4 / 6 | TRP A 207ASN A 214LEU A 282PHE A 219 | 1.47A | 23.4721.68 | None | ||
![]() | 5X66_C_MTXC402_1 (THYMIDYLATE SYNTHASE) | Methotrexate | 5 / 9 | ILE A 281LEU A 268PHE A 219ASN A 221TYR A 237 | 1.78A | 20.77 | None | ||
![]() | 5EWJ_B_QELB503_1 (NMDA GLUTAMATERECEPTOR SUBUNITGLUTAMATE RECEPTORIONOTROPIC, NMDA 2B) | Ifenprodil | 5 / 11 | TYR A 239THR A 198LEU A 286PRO A 132ILE A 200 | 1.61A | 20.0520.95 | None | ||
![]() | 4J5J_B_478B401_1 (PROTEASE) | Amprenavir | 5 / 8 | LEU A 287ALA A 211ASN A 214ILE A 259VAL A 204 | 1.60A | 18.09 | None | ||
![]() | 4Z91_E_4LEE401_1 (GAMMA-AMINOBUTYRIC-ACID RECEPTOR SUBUNITBETA-1) | Isoflurane | 6 / 10 | THR A 201LEU A 205LEU A 242LEU A 227THR A 225LEU A 262 | 1.52A | 20.51 | NoneNoneNoneNone CL A1009 ( 4.4A)None | ||
![]() | 5DLV_B_5D5B927_0 (ECTONUCLEOTIDEPYROPHOSPHATASE/PHOSPHODIESTERASE FAMILYMEMBER 2) | Tauroursodeoxycholic acid | 5 / 12 | THR A 175LEU A 177ILE A 152TRP A 31VAL A 20 | 1.74A | 16.44 | None | ||
![]() | 5VOO_A_C2FA3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLY A 138VAL A 86LEU A 177GLY A 146SER A 144 | 1.49A | 22.26 | NoneNoneNoneNoneK0G A1001 ( 4.1A) | ||
![]() | 1YA3_A_STRA1001_2 (MINERALOCORTICOIDRECEPTOR) | Progesterone | 4 / 4 | LEU A 271LEU A 286SER A 284LEU A 282 | 1.66A | 22.91 | None | ||
![]() | 3EEO_A_SAMA328_0 (MODIFICATIONMETHYLASE HHAI) | S-Adenosylmethionine | 5 / 12 | LEU A 30GLY A 29ASP A 33ILE A 78ASN A 95 | 1.20A | 20.23 | None | ||
![]() | 3HS6_B_EPAB1_1 (PROSTAGLANDIN G/HSYNTHASE 2) | Icosapent | 5 / 12 | GLY A 15PHE A 150ALA A 7SER A 10GLY A 11 | 1.33A | 19.73 | None | ||
![]() | 2Q72_A_IXXA801_1 (TRANSPORTER) | Imipramine | 5 / 11 | LEU A 271LEU A 272VAL A 233ALA A 234LEU A 205 | 1.58A | 21.07 | None | ||
![]() | 1FML_A_RTLA401_0 (RETINOL DEHYDRATASE) | Vitamin A | 5 / 12 | TYR A 209LEU A 220SER A 267LEU A 287ILE A 281 | 1.53A | 19.19 | None | ||
![]() | 1DTL_A_BEPA204_1 (CARDIAC TROPONIN C) | Bepridil | 5 / 11 | PHE A 66LEU A 87MET A 82GLU A 55LEU A 57 | 1.62A | 18.27 | None | ||
![]() | 4EB4_C_D16C402_1 (THYMIDYLATE SYNTHASE) | Raltitrexed | 5 / 9 | ILE A 281LEU A 268PHE A 219ASN A 221TYR A 237 | 1.79A | 23.03 | None | ||
![]() | 1TV8_A_SAMA1501_0 (MOLYBDENUM COFACTORBIOSYNTHESIS PROTEINA) | S-Adenosylmethionine | 4 / 7 | TYR A 239THR A 225GLU A 270VAL A 204 | 1.56A | 20.27 | None CL A1009 ( 4.4A)NoneNone | ||
![]() | 2OIP_A_MTXA605_1 (CHAIN A, CRYSTALSTRUCTURE OF DHFR) | Methotrexate | 5 / 12 | LEU A 27LEU A 89SER A 81ILE A 43LEU A 58 | 1.53A | 21.07 | None | ||
![]() | 4A9K_A_TYLA2200_1 (CREB-BINDING PROTEIN) | Acetaminophen | 4 / 6 | VAL A 212LEU A 220ILE A 259TYR A 209 | 1.31A | 18.21 | None | ||
![]() | 3VHU_A_SNLA1001_1 (MINERALOCORTICOIDRECEPTOR) | Spironolactone | 5 / 12 | LEU A 227ASN A 231ALA A 234LEU A 205THR A 243 | 1.42A | 21.99 | None | ||
![]() | 5JI0_D_BRLD501_1 (PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR GAMMA) | Rosiglitazone | 5 / 12 | GLY A 143SER A 147TYR A 126HIS A 172TYR A 161 | 1.60A | 22.74 | None CL A1007 (-4.5A)NoneNoneNone | ||
![]() | 2W3M_B_FOLB1188_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ILE A 200LEU A 272PHE A 230LEU A 250THR A 198 | 1.44A | 19.16 | None | ||
![]() | 1RU9_H_ACTH611_0 (IMMUNOGLOBULINIGG2A, HEAVY CHAINIMMUNOGLOBULINIGG2A, LIGHT CHAIN) | Acetic acid | 4 / 6 | TRP A 207ASN A 214LEU A 282PHE A 219 | 1.49A | 23.4721.68 | None | ||
![]() | 6B58_A_ACTA608_0 (FUMARATE REDUCTASEFLAVOPROTEIN SUBUNIT) | Acetic acid | 3 / 3 | GLY A 109THR A 111GLU A 290 | 1.55A | 20.03 | None | ||
![]() | 3HCN_B_CHDB2_0 (FERROCHELATASE,MITOCHONDRIAL) | Cholic Acid | 3 / 3 | LEU A 287LEU A 271ARG A 279 | 1.22A | 21.28 | None | ||
![]() | 5ZCO_C_CHDC306_0 (CYTOCHROME C OXIDASESUBUNIT 3CYTOCHROME C OXIDASESUBUNIT 7A1,MITOCHONDRIAL) | Cholic Acid | 4 / 7 | LEU A 30PHE A 150PHE A 159LEU A 32 | 1.22A | 19.239.48 | None | ||
![]() | 1I00_B_D16B409_1 (THYMIDYLATE SYNTHASE) | Raltitrexed | 5 / 9 | ILE A 281TRP A 218LEU A 268ASN A 221TYR A 237 | 1.43A | 20.59 | None | ||
![]() | 4EB4_D_D16D402_1 (THYMIDYLATE SYNTHASE) | Raltitrexed | 5 / 10 | ILE A 281TRP A 218LEU A 268ASN A 221TYR A 237 | 1.45A | 23.03 | None | ||
![]() | 3RIF_A_IVMA403_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.52A | 23.59 | None | ||
![]() | 4Z90_F_4LEF401_1 (GAMMA-AMINOBUTYRIC-ACID RECEPTOR SUBUNITBETA-1) | Isoflurane | 5 / 8 | THR A 225LEU A 262THR A 201LEU A 242LEU A 227 | 1.45A | 20.51 | CL A1009 ( 4.4A)NoneNoneNoneNone | ||
![]() | 5VOP_A_C2FA3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLY A 138VAL A 86LEU A 177GLY A 146SER A 144 | 1.48A | 22.26 | NoneNoneNoneNoneK0G A1001 ( 4.1A) | ||
![]() | 4HXY_B_ACAB502_1 (PLM1) | Aminocaproic Acid | 4 / 7 | VAL A 86GLN A 83LEU A 177ASP A 176 | 1.43A | 21.32 | None | ||
![]() | 1EPB_B_9CRB165_2 (EPIDIDYMAL RETINOICACID-BINDING PROTEIN) | Alitretinoin | 5 / 8 | PHE A 150MET A 162LEU A 32VAL A 36VAL A 18 | 1.73A | 20.39 | None | ||
![]() | 5VOP_B_C2FB3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLY A 138VAL A 86LEU A 177GLY A 146SER A 144 | 1.48A | 22.26 | NoneNoneNoneNoneK0G A1001 ( 4.1A) | ||
![]() | 3RIA_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 136GLY A 109THR A 292PHE A 294ILE A 106 | 1.53A | 23.59 | None | ||
![]() | 3ZOA_A_ACRA1587_2 (TREHALOSESYNTHASE/AMYLASETRES) | Acarbose | 3 / 3 | ARG A 298PHE A 8PRO A 9 | 1.04A | 18.56 | DMS A1003 (-4.0A)DMS A1003 ( 3.9A)None | ||
![]() | 2AVV_A_MK1A901_2 (POL POLYPROTEIN) | Indinavir | 3 / 3 | ASP A 248VAL A 202PRO A 241 | 1.22A | 15.62 | None | ||
![]() | 4K0B_B_SAMB504_0 (S-ADENOSYLMETHIONINESYNTHASE) | S-Adenosylmethionine | 4 / 8 | ASN A 221LEU A 220ASP A 263ILE A 259 | 1.46A | 21.46 | None | ||
![]() | 2PO5_A_CHDA502_0 (FERROCHELATASE,MITOCHONDRIAL) | Cholic Acid | 4 / 8 | MET A 264LEU A 220LEU A 282VAL A 296 | 1.15A | 21.28 | None | ||
![]() | 4BZ6_B_SHHB700_1 (HISTONE DEACETYLASE8) | Vorinostat | 5 / 12 | ASP A 176HIS A 41HIS A 164PHE A 181GLY A 146 | 1.75A | 20.00 | NoneK0G A1001 ( 3.9A) CL A1005 ( 3.9A)NoneNone | ||
![]() | 5VOO_F_C2FF3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLY A 138VAL A 86LEU A 177GLY A 146SER A 144 | 1.45A | 22.26 | NoneNoneNoneNoneK0G A1001 ( 4.1A) | ||
![]() | 4J26_A_ESTA600_1 (ESTROGEN RECEPTORBETA) | Estradiol | 5 / 12 | LEU A 30LEU A 177ILE A 136GLY A 174HIS A 163 | 1.64A | 20.83 | NoneNoneNoneNoneK0G A1001 (-4.0A) | ||
![]() | 1FML_B_RTLB501_0 (RETINOL DEHYDRATASE) | Vitamin A | 5 / 12 | TYR A 209LEU A 220SER A 267LEU A 287ILE A 281 | 1.53A | 19.19 | None | ||
![]() | 1KW0_A_H4BA429_1 (PHENYLALANINE-4-HYDROXYLASE) | Sapropterin | 5 / 12 | LEU A 286LEU A 287SER A 284LEU A 282THR A 199 | 1.64A | 21.13 | None | ||
![]() | 1HWK_A_117A2_2 (HMG-COA REDUCTASE) | Atorvastatin | 5 / 11 | GLU A 166SER A 144HIS A 163SER A 147ALA A 116 | 1.72A | 20.09 | K0G A1001 (-3.6A)K0G A1001 ( 4.1A)K0G A1001 (-4.0A) CL A1007 (-4.5A)None | ||
![]() | 5J5X_B_AZ1B2_1 (CAMP-DEPENDENTPROTEIN KINASECATALYTIC SUBUNITALPHA47P-AZ1-DAL-DAR-DAR-DAR-DAR) | Azelaic Acid | 4 / 7 | GLY A 29GLY A 120SER A 121VAL A 20 | 1.07A | 18.63 | None | ||
![]() | 4WW7_A_ACTA305_0 (EKC/KEOPS COMPLEXSUBUNIT BUD32) | Acetic acid | 4 / 6 | LEU A 272LEU A 271GLU A 270ASN A 274 | 1.43A | 22.30 | None | ||
![]() | 2AVS_B_MK1B902_2 (POL POLYPROTEIN) | Indinavir | 3 / 3 | ASP A 263PRO A 293VAL A 202 | 1.19A | 17.67 | None | ||
![]() | 5ALC_L_TIQL1210_1 (ANTI-TICAGRELOR FAB72, HEAVY CHAINANTI-TICAGRELOR FAB72, LIGHT CHAIN) | Ticagrelor | 5 / 9 | HIS A 41ILE A 43SER A 46TYR A 54ASP A 187 | 1.78A | 20.77 | K0G A1001 ( 3.9A)NoneNoneNone CL A1005 (-3.7A) | ||
![]() | 5IH0_A_ACTA402_0 (MACROLIDE2'-PHOSPHOTRANSFERASE II) | Acetic acid | 4 / 6 | ARG A 131PRO A 108THR A 111ILE A 200 | 1.74A | 18.46 | None | ||
![]() | 1MX1_E_THAE5_2 (LIVERCARBOXYLESTERASE I) | Tacrine | 3 / 3 | PHE A 219LEU A 208LEU A 287 | 0.92A | 19.20 | None | ||
![]() | 6MDQ_A_TESA604_0 (SERUM ALBUMIN) | Testosterone | 4 / 8 | ALA A 194GLY A 170LEU A 167ALA A 173 | 0.97A | 18.27 | CL A1008 (-3.6A)NoneNoneNone | ||
![]() | 3VW1_B_CVIB301_0 (PUTATIVE REGULATORYPROTEIN) | Gentian Violet | 5 / 12 | ILE A 281SER A 284ALA A 234LEU A 208LEU A 272 | 1.38A | 20.00 | None | ||
![]() | 4R38_C_RBFC201_2 (BLUE-LIGHT-ACTIVATEDHISTIDINE KINASE 2) | Riboflavin | 5 / 9 | THR A 224ILE A 259LEU A 227VAL A 202LEU A 205 | 1.62A | 20.00 | CL A1010 (-4.9A)NoneNoneNoneNone | ||
![]() | 3Q07_A_WPPA300_2 (BETA-LACTAMASE) | Piperacillin | 4 / 5 | CYH A 160PRO A 108THR A 111THR A 175 | 1.79A | 20.63 | None | ||
![]() | 2BDM_A_TMIA502_1 (CYTOCHROME P450 2B4) | Bifonazole | 6 / 12 | LEU A 220ILE A 281ASN A 274LEU A 271LEU A 268SER A 267 | 1.59A | 21.22 | None |