PDB ID: 5r82 Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARS-CoV-2 Gene names: 1a-1brep UniProt ID: P0DTD1 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '5r82'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 4ACB_C_DXCC1479_0 (TRANSLATIONELONGATION FACTORSELB) | Deoxycholic Acid | 4 / 5 | THR A 135ILE A 136GLU A 290PHE A 140 | 1.74A | 20.36 | None | ||
![]() | 4BZ6_C_SHHC700_1 (HISTONE DEACETYLASE8) | Vorinostat | 5 / 12 | HIS A 41GLY A 146HIS A 163GLY A 174TYR A 161 | 1.64A | 20.00 | RZS A1001 (-3.6A)NoneNoneNoneNone | ||
![]() | 4ACA_C_DXCC1479_0 (TRANSLATIONELONGATION FACTORSELB) | Deoxycholic Acid | 4 / 5 | THR A 135ILE A 136GLU A 290PHE A 140 | 1.61A | 20.36 | None | ||
![]() | 5BMV_C_VLBC507_1 (TUBULIN BETA CHAINTUBULIN ALPHA-1BCHAIN) | Vinblastine | 4 / 6 | LYS A 102ASP A 176TYR A 37LEU A 32 | 1.74A | 20.65 | None | ||
![]() | 5UBB_A_SAMA301_0 (ALPHA N-TERMINALPROTEINMETHYLTRANSFERASE 1B) | S-Adenosylmethionine | 5 / 12 | GLY A 29VAL A 35SER A 144LEU A 27HIS A 164 | 1.62A | 21.45 | None | ||
![]() | 4X20_B_LOCB502_1 (TUBULIN BETA CHAIN) | Colchicine | 6 / 12 | LEU A 242LEU A 272ALA A 234ASN A 238VAL A 204ILE A 200 | 1.77A | 20.43 | None | ||
![]() | 4QZT_A_RTLA201_1 (RETINOL-BINDINGPROTEIN 2) | Vitamin A | 3 / 3 | PHE A 291THR A 257LEU A 282 | 1.21A | 20.49 | None | ||
![]() | 5IGJ_A_CTYA402_2 (MACROLIDE2'-PHOSPHOTRANSFERASE) | Clarithromycin | 4 / 5 | PRO A 132HIS A 246LEU A 208PHE A 294 | 1.67A | 21.08 | None | ||
![]() | 1SG9_B_SAMB302_0 (HEMK PROTEIN) | S-Adenosylmethionine | 5 / 12 | PHE A 181ILE A 106GLY A 183GLU A 290ALA A 173 | 1.26A | 21.50 | None | ||
![]() | 6BQG_A_ERMA1201_2 (5-HYDROXYTRYPTAMINERECEPTOR 2C,SOLUBLECYTOCHROME B562) | Ergotamine | 5 / 5 | VAL A 42THR A 26LEU A 87VAL A 35LEU A 177 | 1.69A | 20.18 | None | ||
![]() | 3GWX_B_EPAB3_1 (PROTEIN (PEROXISOMEPROLIFERATORACTIVATED RECEPTOR(PPAR-DELTA))) | Icosapent | 5 / 12 | CYH A 22THR A 24THR A 25HIS A 41LEU A 27 | 1.36A | 21.84 | NoneNoneNoneRZS A1001 (-3.6A)None | ||
![]() | 2W98_A_P1ZA1351_1 (PROSTAGLANDINREDUCTASE 2) | Phenylbutazone | 5 / 10 | TYR A 209ILE A 259PHE A 219VAL A 204LEU A 208 | 1.67A | 23.87 | None | ||
![]() | 5ZBD_A_TRPA501_0 (FLAVIN-DEPENDENTL-TRYPTOPHAN OXIDASEVIOA) | L-Tryptophan | 5 / 10 | ALA A 94LEU A 32TYR A 101ASP A 33GLY A 15 | 1.71A | 21.19 | NoneNoneNoneNoneDMS A1004 (-3.9A) | ||
![]() | 2BDM_A_TMIA501_1 (CYTOCHROME P450 2B4) | Bifonazole | 4 / 7 | SER A 62PHE A 66GLY A 23THR A 24 | 1.17A | 21.22 | None | ||
![]() | 3RHW_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.52A | 23.59 | None | ||
![]() | 3FI0_P_TRPP1001_0 (TRYPTOPHANYL-TRNASYNTHETASE) | L-Tryptophan | 4 / 7 | GLN A 192VAL A 186ASP A 187GLN A 189 | 1.46A | 19.20 | DMS A1005 (-4.0A)NoneNoneDMS A1005 ( 3.6A) | ||
![]() | 2BYO_A_LNLA1217_1 (LIPOPROTEIN LPPX) | Alpha-Linolenic Acid | 4 / 4 | VAL A 233LEU A 220ILE A 259LEU A 208 | 1.32A | 22.07 | None | ||
![]() | 1UDU_A_CIAA1003_1 (CGMP-SPECIFIC3',5'-CYCLICPHOSPHODIESTERASE) | Tadalafil | 5 / 11 | SER A 267ILE A 200VAL A 204ALA A 206PHE A 230 | 1.25A | 23.63 | None | ||
![]() | 4ZF8_A_MYTA502_1 (BIFUNCTIONALP-450/NADPH-P450REDUCTASE) | Metyrapone | 5 / 6 | LEU A 220ILE A 259ALA A 260THR A 224ALA A 266 | 1.72A | 20.77 | None | ||
![]() | 3MZE_A_CFXA364_2 (D-ALANYL-D-ALANINECARBOXYPEPTIDASEDACA) | Cefoxitin | 3 / 3 | SER A 147SER A 144HIS A 164 | 1.15A | 21.84 | None | ||
![]() | 3ADX_A_IMNA2_1 (PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR GAMMA) | Indomethacin | 5 / 12 | CYH A 22HIS A 41TYR A 54LEU A 57LEU A 27 | 1.75A | 22.85 | NoneRZS A1001 (-3.6A)NoneNoneNone | ||
![]() | 2FK8_A_SAMA302_1 (METHOXY MYCOLIC ACIDSYNTHASE 4) | S-Adenosylmethionine | 3 / 3 | SER A 158THR A 292GLN A 110 | 1.30A | 21.18 | None | ||
![]() | 1ZZ1_B_SHHB2552_1 (HISTONEDEACETYLASE-LIKEAMIDOHYDROLASE) | Vorinostat | 5 / 12 | LEU A 58ILE A 43HIS A 164GLY A 179PHE A 66 | 1.54A | 21.48 | None | ||
![]() | 5IZJ_G_AZ1G2_1 (CAMP-DEPENDENTPROTEIN KINASECATALYTIC SUBUNITALPHA47P-AZ1-DAR-DAR) | Azelaic Acid | 4 / 7 | GLY A 29GLY A 120SER A 121VAL A 20 | 1.04A | 18.63 | None | ||
![]() | 3NY4_A_SMXA309_1 (BETA-LACTAMASE) | Cefamandole | 4 / 5 | ARG A 131THR A 199GLU A 288GLU A 290 | 1.66A | 23.21 | None | ||
![]() | 3V5V_A_ACTA511_0 (UDP-N-ACETYLGLUCOSAMINE1-CARBOXYVINYLTRANSFERASE) | Acetic acid | 4 / 4 | ASN A 214PHE A 3SER A 1GLN A 299 | 1.54A | 22.74 | None | ||
![]() | 4EJG_B_NCTB501_1 (CYTOCHROME P450 2A13) | Nicotine | 4 / 8 | ASN A 221ALA A 266LEU A 205LEU A 208 | 1.02A | 19.07 | None | ||
![]() | 2ZMB_A_PXBA692_1 (LACTOTRANSFERRIN) | Parecoxib | 3 / 3 | PRO A 52GLU A 55TYR A 54 | 1.40A | 23.63 | None | ||
![]() | 3RIF_A_IVMA403_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.51A | 23.59 | None | ||
![]() | 4EJG_C_NCTC501_1 (CYTOCHROME P450 2A13) | Nicotine | 4 / 7 | ASN A 221ALA A 266LEU A 205LEU A 208 | 1.05A | 19.07 | None | ||
![]() | 4XLI_A_1N1A601_1 (NON-SPECIFICPROTEIN-TYROSINEKINASE) | Dasatinib | 6 / 12 | LEU A 250VAL A 212THR A 257MET A 264LEU A 208ALA A 211 | 1.72A | 21.05 | None | ||
![]() | 5LF3_K_BO2K305_1 (PROTEASOME SUBUNITBETA TYPE-5PROTEASOME SUBUNITBETA TYPE-1) | Bortezomib | 5 / 11 | LYS A 137GLY A 109ALA A 129TYR A 239ASP A 295 | 1.49A | 20.3423.59 | NoneNoneNoneNoneDMS A1003 ( 4.5A) | ||
![]() | 6MD4_A_BRLA501_0 (PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR GAMMA) | Rosiglitazone | 5 / 12 | GLY A 23CYH A 22HIS A 41TYR A 54LEU A 57 | 1.69A | 22.74 | NoneNoneRZS A1001 (-3.6A)NoneNone | ||
![]() | 2NYR_B_SVRB401_2 (NAD-DEPENDENTDEACETYLASESIRTUIN-5) | Suramin | 4 / 6 | GLN A 83ASN A 84ASN A 63LEU A 89 | 1.51A | 21.78 | None | ||
![]() | 4OKX_A_198A1002_2 (ANDROGEN RECEPTOR) | Bicalutamide | 4 / 6 | LEU A 282ASN A 214MET A 276LEU A 208 | 1.43A | 20.25 | None | ||
![]() | 1SG9_C_SAMC303_0 (HEMK PROTEIN) | S-Adenosylmethionine | 5 / 12 | PHE A 181ILE A 106GLY A 183GLU A 290ALA A 173 | 1.23A | 21.50 | None | ||
![]() | 4IB4_A_ERMA2001_1 (CHIMERA PROTEIN OFHUMAN5-HYDROXYTRYPTAMINERECEPTOR 2B AND E.COLI SOLUBLECYTOCHROME B562) | Ergotamine | 5 / 12 | LEU A 27VAL A 20MET A 162ALA A 173PHE A 181 | 1.49A | 21.30 | None | ||
![]() | 4LXZ_C_SHHC406_1 (HISTONE DEACETYLASE2) | Vorinostat | 5 / 12 | HIS A 41GLY A 146HIS A 163GLY A 174TYR A 161 | 1.60A | 22.34 | RZS A1001 (-3.6A)NoneNoneNoneNone | ||
![]() | 5VOO_D_C2FD3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLY A 174VAL A 35LEU A 32GLY A 29PHE A 140 | 1.48A | 22.26 | None | ||
![]() | 2DTJ_A_THRA401_0 (ASPARTOKINASE) | L-Threonine | 4 / 8 | ASP A 295GLY A 109ALA A 129GLN A 127 | 1.15A | 20.57 | DMS A1003 ( 4.5A)NoneNoneDMS A1003 (-3.4A) | ||
![]() | 3GVU_A_STIA1002_1 (TYROSINE-PROTEINKINASE ABL2) | Imatinib | 5 / 8 | ALA A 194LEU A 167ALA A 173GLY A 183PRO A 184 | 1.64A | 21.83 | NoneDMS A1005 ( 4.8A)NoneNoneNone | ||
![]() | 3D20_A_017A201_1 (HIV-1 PROTEASE) | Darunavir | 5 / 12 | LEU A 32GLY A 29VAL A 91GLY A 71PRO A 96 | 1.32A | 16.26 | NoneNoneNoneDMS A1004 ( 4.5A)None | ||
![]() | 4OKW_A_198A1001_2 (ANDROGEN RECEPTOR) | Bicalutamide | 4 / 7 | LEU A 220MET A 276LEU A 268ILE A 259 | 1.30A | 20.25 | None | ||
![]() | 3GCZ_A_SAMA4633_0 (POLYPROTEIN) | S-Adenosylmethionine | 5 / 12 | SER A 1GLY A 2GLY A 215LEU A 220ILE A 281 | 1.22A | 22.16 | None | ||
![]() | 6MA7_A_TPFA602_0 (CYTOCHROME P450 3A4) | Fluconazole | 4 / 7 | SER A 267THR A 257ILE A 213ALA A 211 | 1.24A | 21.27 | None | ||
![]() | 4AC9_C_DXCC1479_0 (MJ0495-LIKE PROTEIN) | Deoxycholic Acid | 4 / 5 | THR A 135ILE A 136GLU A 290PHE A 140 | 1.62A | 20.36 | None | ||
![]() | 4EB6_C_VLBC503_1 (TUBULIN BETA CHAINTUBULIN ALPHA CHAIN) | Vinblastine | 5 / 12 | VAL A 204PRO A 293ILE A 259VAL A 212ILE A 213 | 1.26A | 20.8620.89 | None | ||
![]() | 1NV8_B_SAMB301_0 (HEMK PROTEIN) | S-Adenosylmethionine | 5 / 12 | PHE A 181ILE A 106GLY A 183GLU A 290ALA A 173 | 1.19A | 21.50 | None | ||
![]() | 2OIP_C_MTXC613_1 (CHAIN A, CRYSTALSTRUCTURE OF DHFR) | Methotrexate | 5 / 12 | VAL A 233LEU A 271SER A 267THR A 199LEU A 205 | 1.47A | 21.07 | None | ||
![]() | 5Y9M_A_NIOA401_1 (CASEIN KINASE IISUBUNIT ALPHA') | Niacin | 4 / 8 | LEU A 167VAL A 171LYS A 137ASP A 197 | 1.18A | 21.35 | DMS A1005 ( 4.8A)NoneNoneNone | ||
![]() | 2BDM_A_TMIA503_1 (CYTOCHROME P450 2B4) | Bifonazole | 4 / 8 | LEU A 32VAL A 18VAL A 148VAL A 157 | 1.11A | 21.22 | None | ||
![]() | 1V8B_C_ADNC2502_2 (ADENOSYLHOMOCYSTEINASE) | Adenosine | 3 / 3 | GLU A 240THR A 199LEU A 268 | 0.81A | 19.96 | None | ||
![]() | 3N23_C_OBNC1_1 (SODIUM/POTASSIUM-TRANSPORTING ATPASESUBUNIT ALPHA-1) | Ouabain | 5 / 11 | GLN A 110ASP A 289ASN A 203ALA A 234THR A 199 | 1.51A | 14.14 | None | ||
![]() | 3BGR_A_T27A556_1 (REVERSETRANSCRIPTASE/RIBONUCLEASE HP51 RT) | Rilpivirine | 5 / 11 | ASN A 203TYR A 209LEU A 268TYR A 239GLU A 288 | 1.75A | 17.7220.63 | None | ||
![]() | 4H1N_A_CGEA505_1 (CYTOCHROME P450 2B4) | Clopidogrel | 5 / 11 | ILE A 136ILE A 106PHE A 8THR A 292ILE A 200 | 1.30A | 21.73 | NoneNoneDMS A1003 (-3.7A)NoneNone | ||
![]() | 1DLS_A_MTXA188_1 (DIHYDROFOLATEREDUCTASE) | Methotrexate | 5 / 12 | ILE A 200PHE A 291GLN A 127SER A 284TYR A 239 | 1.47A | 17.55 | NoneNoneDMS A1003 (-3.4A)NoneNone | ||
![]() | 5KC0_A_RBFA303_2 (RIBOFLAVINTRANSPORTER RIBU) | Riboflavin | 3 / 3 | LYS A 88LEU A 75ILE A 78 | 1.10A | 22.19 | None | ||
![]() | 1DRF_A_FOLA187_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 6 / 12 | ILE A 200PHE A 291ARG A 298GLN A 127SER A 284TYR A 239 | 1.64A | 17.82 | NoneNoneDMS A1003 (-3.8A)DMS A1003 (-3.4A)NoneNone | ||
![]() | 1BDW_A_DVAA6_0 (GRAMICIDIN A) | L-Valine | 3 / 3 | ALA A 94VAL A 35TRP A 31 | 1.60A | 4.57 | None | ||
![]() | 3KEE_B_30BB500_1 (GENOME POLYPROTEIN) | Simeprevir | 5 / 12 | GLN A 189VAL A 171PHE A 185ALA A 193ALA A 194 | 1.23A | 23.55 | DMS A1005 ( 3.6A)NoneNoneNoneNone | ||
![]() | 3HJ3_C_MTXC613_1 (CHAIN A, CRYSTALSTRUCTURE OF DHFR) | Methotrexate | 5 / 12 | VAL A 233LEU A 271SER A 267THR A 199LEU A 205 | 1.50A | 20.69 | None | ||
![]() | 5KIR_B_RCXB601_2 (PROSTAGLANDIN G/HSYNTHASE 2) | Rofecoxib | 4 / 4 | LEU A 208ARG A 217ILE A 281PHE A 219 | 1.47A | 19.66 | None | ||
![]() | 1GTN_O_TRPO81_0 (TRP RNA-BINDINGATTENUATION PROTEIN) | L-Tryptophan | 5 / 10 | ALA A 194HIS A 172THR A 135THR A 169ALA A 193 | 1.66A | 13.04 | None | ||
![]() | 4ODO_A_FK5A205_1 (PEPTIDYL-PROLYLCIS-TRANS ISOMERASESLYD) | Tacrolimus | 5 / 10 | LEU A 268LEU A 262LEU A 227LEU A 242LEU A 272 | 1.35A | 19.27 | None | ||
![]() | 3N23_A_OBNA1_1 (SODIUM/POTASSIUM-TRANSPORTING ATPASESUBUNIT ALPHA-1) | Ouabain | 5 / 11 | GLN A 110ASP A 289ASN A 203ALA A 234THR A 199 | 1.51A | 14.14 | None | ||
![]() | 3RIA_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 136GLY A 109THR A 292PHE A 294ILE A 106 | 1.51A | 23.59 | None | ||
![]() | 5JQ7_B_T0RB705_1 (ENVELOPEGLYCOPROTEIN1,ENVELOPEGLYCOPROTEIN1,ENVELOPEGLYCOPROTEIN 1ENVELOPEGLYCOPROTEIN 2) | Toremifene | 4 / 7 | LEU A 205GLU A 270ALA A 266LEU A 272 | 1.05A | 21.41 | None | ||
![]() | 1HRK_B_CHDB2501_0 (FERROCHELATASE) | Cholic Acid | 5 / 12 | LEU A 30MET A 17ILE A 136HIS A 164VAL A 20 | 1.67A | 21.28 | None | ||
![]() | 3UPR_C_1KXC277_2 (HLA CLASS IHISTOCOMPATIBILITYANTIGEN, B-57 ALPHACHAINPEP-V) | Abacavir | 3 / 3 | ILE A 78LEU A 75VAL A 73 | 0.94A | 4.15 | None | ||
![]() | 4JEC_B_478B401_2 (HIV-1 PROTEASE) | Amprenavir | 5 / 12 | LEU A 32GLY A 29VAL A 91GLY A 71PRO A 96 | 1.21A | 15.62 | NoneNoneNoneDMS A1004 ( 4.5A)None | ||
![]() | 3NU5_B_478B401_1 (PROTEASE) | Amprenavir | 5 / 12 | LEU A 32GLY A 29VAL A 91GLY A 71PRO A 96 | 1.32A | 17.67 | NoneNoneNoneDMS A1004 ( 4.5A)None |