PDB ID: 5r81 Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARS-CoV-2 Gene names: 1a-1brep UniProt ID: P0DTD1 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '5r81'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 6AYC_A_1YNA502_1 (PROTEIN CYP51) | Itraconazole | 5 / 12 | PHE A 3ALA A 210TYR A 237THR A 225MET A 276 | 1.53A | 18.91 | None | ||
![]() | 4U0I_A_0LIA1001_2 (MAST/STEM CELLGROWTH FACTORRECEPTORKIT,MAST/STEM CELLGROWTH FACTORRECEPTOR KIT) | Ponatinib | 5 / 12 | LEU A 167THR A 135GLY A 149HIS A 41PHE A 140 | 1.58A | 20.60 | NoneNoneNoneRZJ A1001 (-3.7A)None | ||
![]() | 2HA4_B_ACHB603_0 (ACETYLCHOLINESTERASE) | Acetylcholine | 4 / 7 | TYR A 161TYR A 118TYR A 126GLY A 124 | 1.66A | 20.59 | None | ||
![]() | 2FT9_A_CHDA131_0 (FATTY ACID-BINDINGPROTEIN 2, LIVER) | Cholic Acid | 6 / 11 | LEU A 205LEU A 250ILE A 200PRO A 132GLN A 110LEU A 227 | 1.78A | 15.79 | None | ||
![]() | 4WQ4_A_ACTA403_0 (TRNA N6-ADENOSINETHREONYLCARBAMOYLTRANSFERASE) | Acetic acid | 3 / 3 | VAL A 77LEU A 89VAL A 68 | 0.88A | 19.67 | None | ||
![]() | 2YVL_B_SAMB602_0 (HYPOTHETICAL PROTEIN) | S-Adenosylmethionine | 6 / 12 | THR A 175ILE A 136GLY A 146ALA A 173VAL A 86VAL A 148 | 1.69A | 21.64 | None | ||
![]() | 2B82_A_ADNA1001_1 (CLASS B ACIDPHOSPHATASE) | Adenosine | 5 / 10 | LYS A 5GLU A 288LEU A 282GLY A 215ASP A 216 | 1.74A | 20.71 | None | ||
![]() | 3WSJ_A_MK1A201_2 (PROTEASE) | Indinavir | 4 / 7 | ARG A 279ASP A 216ALA A 211ILE A 281 | 1.36A | 16.83 | None | ||
![]() | 6MVX_A_K4DA1304_0 (ION TRANSPORTPROTEIN) | Flecainide | 4 / 6 | LEU A 27MET A 165THR A 175LEU A 30 | 1.42A | 21.98 | NoneRZJ A1001 (-3.7A)NoneNone | ||
![]() | 4DJF_A_C2FA300_0 (5-METHYLTETRAHYDROFOLATE CORRINOID/IRONSULFUR PROTEINMETHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | GLU A 270ASN A 221PHE A 223ILE A 281GLY A 275 | 1.67A | 21.43 | None | ||
![]() | 5HG0_B_SAMB301_0 (PANTOTHENATESYNTHETASE) | S-Adenosylmethionine | 5 / 12 | HIS A 172HIS A 163TYR A 126VAL A 13GLY A 143 | 1.63A | 24.26 | DMS A1005 ( 4.9A)DMS A1005 (-3.9A)NoneNoneNone | ||
![]() | 6F6J_A_ACTA404_0 (L-LYSINE3-HYDROXYLASE) | Acetic acid | 4 / 6 | ILE A 259TYR A 209LEU A 208SER A 267 | 1.54A | 23.34 | None | ||
![]() | 5ESL_A_1YNA701_2 (LANOSTEROL 14-ALPHADEMETHYLASE) | Itraconazole | 4 / 5 | ALA A 234TYR A 239PRO A 132GLY A 149 | 1.25A | 19.04 | None | ||
![]() | 4WCX_C_SAMC503_0 (BIOTIN AND THIAMINSYNTHESIS ASSOCIATED) | S-Adenosylmethionine | 5 / 12 | GLU A 290GLY A 109GLU A 240ALA A 173HIS A 172 | 1.51A | 21.12 | NoneNoneNoneNoneDMS A1005 ( 4.9A) | ||
![]() | 2ZM9_A_ACAA502_1 (6-AMINOHEXANOATE-DIMER HYDROLASE) | Aminocaproic Acid | 4 / 8 | ALA A 116TYR A 118HIS A 163GLY A 124 | 1.38A | 21.81 | NoneNoneDMS A1005 (-3.9A)None | ||
![]() | 3LXK_A_MI1A1125_1 (TYROSINE-PROTEINKINASE JAK3) | Tofacitinib | 5 / 12 | LEU A 167VAL A 171ALA A 173LYS A 137ASP A 197 | 1.28A | 20.59 | None | ||
![]() | 4N48_A_SAMA601_0 (CAP-SPECIFIC MRNA(NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1) | S-Adenosylmethionine | 6 / 12 | GLY A 183PRO A 184PHE A 181ASN A 133ILE A 106THR A 111 | 1.49A | 19.73 | None | ||
![]() | 4K50_B_ACTB701_0 (RNA (33-MER)RNA POLYMERASE3D-POL) | Acetic acid | 3 / 3 | HIS A 163GLY A 138ILE A 136 | 1.08A | 20.90 | DMS A1005 (-3.9A)NoneNone | ||
![]() | 2W3V_A_TOPA1169_1 (DIHYDROFOLATEREDUCTASE) | Trimethoprim | 5 / 12 | VAL A 42LEU A 67PHE A 66ILE A 43THR A 26 | 1.43A | 19.87 | None | ||
![]() | 1N4H_A_REAA500_1 (NUCLEAR RECEPTORROR-BETA) | Tretinoin | 5 / 11 | GLN A 74CYH A 22ARG A 76VAL A 36LEU A 58 | 1.51A | 22.36 | NoneNoneDMS A1002 (-3.5A)NoneNone | ||
![]() | 6AWV_A_BEZA202_0 (ARA H 8 ALLERGEN) | Benzoic Acid | 4 / 4 | PHE A 230ASP A 229LEU A 268LYS A 269 | 1.73A | 17.10 | None | ||
![]() | 1YI4_A_ADNA306_1 (PROTO-ONCOGENESERINE/THREONINE-PROTEIN KINASE PIM-1) | Adenosine | 5 / 10 | LEU A 250PHE A 294ALA A 206ILE A 200ASP A 245 | 1.51A | 19.31 | None | ||
![]() | 2JJP_A_KLNA413_1 (CYTOCHROME P450113A1) | Ketoconazole | 5 / 12 | HIS A 172MET A 17PRO A 122ALA A 173PHE A 112 | 1.61A | 20.43 | DMS A1005 ( 4.9A)NoneNoneNoneNone | ||
![]() | 4R3A_B_RBFB402_1 (BLUE-LIGHT-ACTIVATEDHISTIDINE KINASE 2) | Riboflavin | 5 / 10 | THR A 225ILE A 259LEU A 227VAL A 202LEU A 205 | 1.63A | 20.00 | None | ||
![]() | 3T01_A_PPFA503_1 (PHOSPHONOACETATEHYDROLASE) | Foscarnet | 4 / 7 | PHE A 112THR A 111ASN A 151ILE A 106 | 1.43A | 21.48 | None | ||
![]() | 5N0X_B_SAMB501_0 (PEPTIDEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 136TYR A 182GLY A 174HIS A 164TYR A 126 | 1.41A | 22.48 | None | ||
![]() | 5D4U_A_SAMA301_0 (UNCHARACTERIZEDPROTEIN MJ0489) | S-Adenosylmethionine | 5 / 12 | GLY A 174ILE A 136HIS A 172GLY A 149GLY A 29 | 1.44A | 22.19 | NoneNoneDMS A1005 ( 4.9A)NoneNone | ||
![]() | 1TSN_A_C2FA266_0 (THYMIDYLATE SYNTHASE) | Levomefolic acid | 5 / 12 | HIS A 246ILE A 249LEU A 253GLY A 251VAL A 297 | 1.54A | 19.62 | None | ||
![]() | 5NEK_B_AZMB302_1 (PEPTIDOGLYCANN-ACETYLGLUCOSAMINEDEACETYLASE) | Acetazolamide | 4 / 8 | ASP A 187HIS A 164HIS A 41PRO A 39 | 1.66A | 23.49 | NoneNoneRZJ A1001 (-3.7A)None | ||
![]() | 4L9Q_B_9TPB601_1 (SERUM ALBUMIN) | Teniposide | 5 / 12 | ALA A 94LYS A 90TYR A 37LEU A 177GLY A 179 | 1.35A | 17.80 | None | ||
![]() | 3F8W_B_ADNB301_1 (PURINE-NUCLEOSIDEPHOSPHORYLASE) | Adenosine | 5 / 12 | SER A 144TYR A 161GLY A 124TYR A 126HIS A 172 | 1.61A | 24.16 | DMS A1005 ( 3.7A)NoneNoneNoneDMS A1005 ( 4.9A) | ||
![]() | 3CS9_C_NILC600_2 (PROTO-ONCOGENETYROSINE-PROTEINKINASE ABL1) | Nilotinib | 5 / 9 | TYR A 37VAL A 86VAL A 148MET A 17PHE A 103 | 1.75A | 22.05 | None | ||
![]() | 3ELZ_B_CHDB150_0 (ILEAL BILEACID-BINDING PROTEIN) | Cholic Acid | 5 / 11 | GLN A 74VAL A 73LEU A 27GLN A 19THR A 26 | 1.69A | 20.13 | None | ||
![]() | 1AXW_A_MTXA732_1 (THYMIDYLATE SYNTHASE) | Methotrexate | 5 / 12 | HIS A 246ILE A 249LEU A 253GLY A 251VAL A 297 | 1.49A | 20.13 | None | ||
![]() | 6CE2_B_SVRB202_2 (-) | Suramin | 5 / 12 | LEU A 32LEU A 30GLY A 15GLY A 11LYS A 102 | 1.43A | 15.56 | NoneNoneDMS A1004 (-4.1A)NoneNone | ||
![]() | 1IWH_A_PEMA501_1 (HEMOGLOBIN ALPHACHAIN) | Bezafibrate | 4 / 6 | ALA A 285ASP A 216ALA A 211LEU A 208 | 1.39A | 17.47 | None | ||
![]() | 3BGD_B_PM6B301_1 (THIOPURINES-METHYLTRANSFERASE) | Mercaptopurine | 4 / 8 | PHE A 291VAL A 202PRO A 293ARG A 298 | 1.33A | 21.67 | NoneNoneNoneDMS A1003 (-4.3A) | ||
![]() | 5J7W_D_MTXD402_1 (THYMIDYLATE SYNTHASE) | Methotrexate | 5 / 12 | ILE A 259LEU A 242LEU A 253GLY A 251ALA A 206 | 1.57A | 22.85 | None | ||
![]() | 5N0X_A_SAMA501_0 (PEPTIDEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 136TYR A 182GLY A 174HIS A 164TYR A 126 | 1.40A | 22.48 | None | ||
![]() | 3UT5_B_LOCB502_1 (TUBULIN BETA CHAIN) | Colchicine | 5 / 12 | ALA A 266LYS A 269LEU A 271ASN A 274ILE A 281 | 1.56A | 20.86 | None | ||
![]() | 2ZXW_C_CHDC271_0 (CYTOCHROME C OXIDASEPOLYPEPTIDE 7A1CYTOCHROME C OXIDASESUBUNIT 3) | Cholic Acid | 4 / 7 | LYS A 269LEU A 268LEU A 208PHE A 219 | 1.33A | 19.239.48 | None | ||
![]() | 3DZU_A_9CRA7223_1 (RETINOIC ACIDRECEPTOR RXR-ALPHA) | Alitretinoin | 5 / 12 | ASN A 214ILE A 213LEU A 220VAL A 204LEU A 282 | 1.39A | 20.96 | None | ||
![]() | 2OA1_B_ADNB2005_1 (TRYPTOPHANHALOGENASE) | Adenosine | 4 / 7 | GLY A 29GLY A 146VAL A 68LEU A 89 | 1.21A | 21.42 | None | ||
![]() | 3RIA_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 136GLY A 109THR A 292PHE A 294ILE A 106 | 1.56A | 23.59 | None | ||
![]() | 5ODI_G_ACTG702_0 (HETERODISULFIDEREDUCTASE, SUBUNIT A) | Acetic acid | 3 / 3 | GLY A 143THR A 26ASN A 28 | 0.90A | 20.52 | None | ||
![]() | 5N0O_B_SAMB501_0 (PEPTIDEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 136TYR A 182GLY A 174HIS A 164TYR A 126 | 1.40A | 22.65 | None | ||
![]() | 3LS4_H_TCIH220_1 (HEAVY CHAIN OFANTIBODY FABFRAGMENT) | Dronabinol | 5 / 10 | VAL A 148LEU A 115TYR A 101GLY A 29GLY A 120 | 1.47A | 22.98 | None | ||
![]() | 3IHZ_A_FK5A501_2 (70 KDAPEPTIDYLPROLYLISOMERASE, PUTATIVE) | Tacrolimus | 4 / 8 | ASP A 263GLY A 258SER A 254ILE A 259 | 1.22A | 17.19 | None | ||
![]() | 5N0O_A_SAMA501_0 (PEPTIDEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 136TYR A 182GLY A 174HIS A 164TYR A 126 | 1.41A | 22.65 | None | ||
![]() | 3SUF_A_SUEA1201_1 (NS3 PROTEASE, NS4APROTEIN) | Grazoprevir | 5 / 12 | GLY A 278ARG A 217LEU A 208PHE A 219ALA A 211 | 1.43A | 23.15 | None | ||
![]() | 2J2P_B_SC2B1290_1 (FICOLIN-2) | Acetylcysteine | 4 / 8 | LEU A 268SER A 267LEU A 208ASP A 263 | 1.32A | 23.15 | None | ||
![]() | 1FDW_A_ESTA350_1 (17-BETA-HYDROXYSTEROID DEHYDROGENASE) | Estradiol | 5 / 10 | VAL A 148LEU A 30PRO A 39VAL A 86GLU A 178 | 1.70A | 19.83 | None | ||
![]() | 3TNE_A_RITA401_2 (SECRETED ASPARTICPROTEASE) | Ritonavir | 4 / 6 | SER A 147TYR A 118THR A 26THR A 25 | 1.46A | 23.20 | None | ||
![]() | 1TLS_A_C2FA266_0 (THYMIDYLATE SYNTHASE) | Levomefolic acid | 5 / 12 | HIS A 246ILE A 249LEU A 253GLY A 251VAL A 297 | 1.44A | 19.62 | None | ||
![]() | 3RIF_A_IVMA403_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.55A | 23.59 | None | ||
![]() | 6B50_A_OAQA302_0 (SULFOTRANSFERASEOXAMNIQUINERESISTANCE PROTEIN) | Oxamniquine | 5 / 12 | PRO A 168MET A 165LEU A 167PHE A 181MET A 49 | 1.71A | 22.26 | RZJ A1001 (-3.6A)RZJ A1001 (-3.7A)NoneNoneRZJ A1001 (-3.7A) | ||
![]() | 5YCP_A_BRLA501_0 (PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR GAMMA) | Rosiglitazone | 5 / 12 | LEU A 250ILE A 213MET A 264LEU A 272TYR A 239 | 1.68A | 22.59 | None | ||
![]() | 4FOG_D_C2FD302_0 (THYMIDYLATE SYNTHASE) | Levomefolic acid | 5 / 11 | ILE A 259LEU A 242LEU A 253GLY A 251ALA A 206 | 1.63A | 22.49 | None | ||
![]() | 3BXO_B_SAMB238_0 (N,N-DIMETHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | GLY A 138LEU A 115MET A 165SER A 144TYR A 118 | 1.57A | 22.85 | NoneNoneRZJ A1001 (-3.7A)DMS A1005 ( 3.7A)None | ||
![]() | 4ZDY_A_1YNA602_2 (LANOSTEROL 14-ALPHADEMETHYLASE) | Itraconazole | 3 / 3 | ALA A 234TYR A 239PRO A 132 | 1.31A | 19.48 | None | ||
![]() | 2OUZ_A_C3DA999_0 (ESTROGEN RECEPTOR) | Lasofoxifene | 5 / 12 | LEU A 208LEU A 262LEU A 242LEU A 272LEU A 250 | 1.40A | 21.94 | None | ||
![]() | 3RHW_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.57A | 23.59 | None | ||
![]() | 3BJW_E_SVRE510_2 (PHOSPHOLIPASE A2) | Suramin | 4 / 6 | GLN A 256GLY A 258ARG A 217LEU A 220 | 1.49A | 15.48 | None | ||
![]() | 1I2W_B_CFXB2300_2 (BETA-LACTAMASE) | Cefoxitin | 3 / 3 | PRO A 241LEU A 242THR A 292 | 0.96A | 21.04 | None | ||
![]() | 3U5K_A_08JA1_1 (BROMODOMAIN-CONTAINING PROTEIN 4) | Midazolam | 4 / 8 | PRO A 293VAL A 297LEU A 253ILE A 249 | 1.19A | 20.90 | None | ||
![]() | 5X23_A_LSNA502_2 (CYTOCHROME P450 2C9) | Losartan | 3 / 3 | LEU A 272VAL A 204ASP A 289 | 1.12A | 20.80 | None | ||
![]() | 3ADX_B_IMNB3_1 (PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR GAMMA) | Indomethacin | 6 / 12 | LEU A 242GLY A 275ALA A 266LEU A 208LEU A 205VAL A 204 | 1.54A | 22.85 | None | ||
![]() | 2AZQ_A_PCFA954_0 (CATECHOL1,2-DIOXYGENASE) | Colfosceril palmitate | 5 / 9 | THR A 25LEU A 27HIS A 80LEU A 57GLU A 55 | 1.54A | 21.56 | None | ||
![]() | 5N0R_A_SAMA501_0 (PEPTIDEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 136TYR A 182GLY A 174HIS A 164TYR A 126 | 1.38A | 22.48 | None | ||
![]() | 4N49_A_SAMA601_0 (CAP-SPECIFIC MRNA(NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1) | S-Adenosylmethionine | 6 / 12 | GLY A 183PRO A 184PHE A 181ASN A 133ILE A 106THR A 111 | 1.53A | 19.73 | None | ||
![]() | 3N8Z_B_FLPB1701_1 (PROSTAGLANDIN G/HSYNTHASE 1) | Flurbiprofen | 5 / 12 | ARG A 217LEU A 253LEU A 282ILE A 213LEU A 220 | 1.43A | 18.21 | None |