PDB ID: 5r80 Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARS-CoV-2 Gene names: 1a-1brep UniProt ID: P0DTD1 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '5r80'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 4MDA_A_RLTA403_1 (MARINER MOS1TRANSPOSASE) | Raltegravir | 4 / 6 | ASP A 153ASN A 151TYR A 101ASP A 155 | 1.51A | 21.20 | None | ||
![]() | 3OXV_C_478C200_1 (HIV-1 PROTEASE) | Amprenavir | 5 / 9 | ASP A 176VAL A 104GLY A 149VAL A 114ILE A 106 | 1.45A | 17.83 | None | ||
![]() | 2QAK_A_1UNA1001_3 (PROTEASE RETROPEPSIN) | Nelfinavir | 5 / 12 | GLY A 71ALA A 70ASN A 95GLY A 29VAL A 77 | 1.30A | 17.83 | DMS A1005 (-3.8A)DMS A1005 ( 4.0A)DMS A1005 ( 4.6A)NoneNone | ||
![]() | 5BTA_H_MFXH101_1 (DNA GYRASE SUBUNIT ADNA GYRASE SUBUNIT BDNA SUBSTRATE 24-MERGGTCATGAATGACTATGCACGTAA) | Moxifloxacin | 4 / 6 | GLY A 109THR A 198GLU A 240ARG A 105 | 1.54A | 21.1921.18 | None | ||
![]() | 2V0M_A_KLNA1500_1 (CYTOCHROME P450 3A4) | Ketoconazole | 5 / 11 | PHE A 230LEU A 282ALA A 285GLU A 270LEU A 287 | 1.59A | 21.27 | None | ||
![]() | 3RHW_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.54A | 23.59 | None | ||
![]() | 3KO0_B_TFPB202_2 (PROTEIN S100-A4) | Trifluoperazine | 4 / 6 | SER A 158PHE A 150ILE A 152PHE A 294 | 1.29A | 16.95 | None | ||
![]() | 4C5N_A_PXLA300_1 (PHOSPHOMETHYLPYRIMIDINE KINASE) | Pyridoxal | 4 / 7 | GLY A 29GLY A 146VAL A 20HIS A 41 | 1.05A | 22.57 | NoneNoneNoneRZG A1001 (-3.7A) | ||
![]() | 2RCT_A_RTLA140_0 (RETINOL-BINDINGPROTEIN II, CELLULAR) | Vitamin A | 5 / 12 | ALA A 211THR A 257ARG A 217LEU A 220LEU A 250 | 1.52A | 19.54 | None | ||
![]() | 4QVY_H_BO2H301_1 (PROTEASOME SUBUNITBETA TYPE-2) | Bortezomib | 5 / 11 | THR A 135CYH A 128ALA A 173GLY A 174THR A 175 | 1.54A | 19.69 | None | ||
![]() | 2VCV_G_ASDG1224_1 (GLUTATHIONES-TRANSFERASE A3) | 4-Androstenedione | 4 / 7 | LEU A 250ALA A 260LEU A 262ALA A 266 | 1.14A | 21.29 | None | ||
![]() | 3W1W_B_CHDB504_0 (FERROCHELATASE,MITOCHONDRIAL) | Cholic Acid | 5 / 12 | LEU A 208PHE A 219LEU A 268ILE A 213GLN A 256 | 1.68A | 20.69 | None | ||
![]() | 4W9N_C_CCSC1548_0 (ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE) | Carbocisteine | 3 / 3 | ALA A 70TRP A 31VAL A 68 | 1.60A | 24.03 | DMS A1005 ( 4.0A)NoneNone | ||
![]() | 6A7P_B_9SCB601_0 (SERUM ALBUMIN) | Aripiprazole | 6 / 12 | ILE A 213VAL A 296CYH A 300ALA A 210LEU A 242LEU A 262 | 1.74A | 17.80 | None | ||
![]() | 1JGS_A_SALA256_1 (MULTIPLE ANTIBIOTICRESISTANCE PROTEINMARR) | Salicylic acid | 4 / 7 | VAL A 204LEU A 268LEU A 250VAL A 296 | 1.31A | 16.23 | None | ||
![]() | 4MMB_A_SREA603_1 (TRANSPORTER) | Sertraline | 5 / 9 | ASP A 289PRO A 241ALA A 234TYR A 239GLY A 109 | 1.67A | 19.58 | None | ||
![]() | 1D4S_A_TPVA201_1 (PROTEIN (HIV-1PROTEASE)) | Tipranavir | 5 / 10 | LEU A 30VAL A 114ILE A 136GLY A 174PHE A 159 | 1.55A | 14.29 | None | ||
![]() | 3IWM_G_010G6_0 (3C-LIKE PROTEINASEN-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE) | Benzyl alcohol | 4 / 4 | THR A 25LEU A 27MET A 49ASN A 142 | 1.08A | 96.08 | NoneNoneRZG A1001 (-4.2A)None | ||
![]() | 4MM5_A_SREA603_1 (TRANSPORTER) | Sertraline | 5 / 9 | ASP A 289PRO A 241ALA A 234TYR A 239GLY A 109 | 1.62A | 21.33 | None | ||
![]() | 2KOT_B_ANWB99_0 (PROTEIN S100-A13) | Amlexanox | 4 / 8 | ALA A 266VAL A 233PHE A 230THR A 226 | 1.41A | 15.25 | None | ||
![]() | 2E1Q_A_SALA2006_1 (XANTHINEDEHYDROGENASE/OXIDASE) | Salicylic acid | 4 / 6 | PHE A 230THR A 201VAL A 204LEU A 208 | 1.11A | 12.99 | None | ||
![]() | 1YMX_B_CFXB1002_1 (BETA-LACTAMASECTX-M-9) | Cefoxitin | 5 / 12 | SER A 147ASN A 119SER A 144GLY A 146GLY A 29 | 1.61A | 20.63 | None | ||
![]() | 2NNK_A_ROCA401_3 (PROTEASE) | Saquinavir | 6 / 12 | ASP A 295ASP A 289ILE A 249PRO A 252VAL A 297VAL A 296 | 1.80A | 14.78 | DMS A1004 ( 4.4A)NoneNoneNoneNoneNone | ||
![]() | 4MA7_A_P2ZA301_1 (MAJOR PRION PROTEIN) | Promazine | 4 / 8 | VAL A 104TYR A 161ILE A 136THR A 292 | 1.20A | 17.28 | None | ||
![]() | 1UOB_A_PNNA1311_0 (DEACETOXYCEPHALOSPORIN C SYNTHETASE) | Benzylpenicillin | 5 / 12 | LEU A 253ASP A 248LEU A 227VAL A 261ILE A 249 | 1.41A | 21.39 | None | ||
![]() | 3ELZ_C_CHDC150_0 (ILEAL BILEACID-BINDING PROTEIN) | Cholic Acid | 5 / 12 | GLN A 74VAL A 73LEU A 27GLN A 19THR A 26 | 1.66A | 20.13 | None | ||
![]() | 5D4N_C_ACTC201_0 (NITROGEN REGULATORYPROTEIN P-II) | Acetic acid | 4 / 5 | VAL A 125VAL A 13GLY A 11PHE A 150 | 1.28A | 17.39 | None | ||
![]() | 4WNU_C_QDNC602_1 (CYTOCHROME P450 2D6) | Quinidine | 5 / 11 | GLY A 143LEU A 27PHE A 140ALA A 116SER A 147 | 1.45A | 21.99 | None | ||
![]() | 5MAF_A_XINA403_1 (MATERNAL EMBRYONICLEUCINE ZIPPERKINASE) | Nintedanib | 5 / 12 | GLU A 288ALA A 206LEU A 250GLY A 109GLU A 240 | 1.38A | 22.76 | None | ||
![]() | 2HW2_A_RFPA1200_1 (RIFAMPIN ADP-RIBOSYLTRANSFERASE) | Rifampicin | 5 / 12 | PHE A 219MET A 276GLY A 275LEU A 271LEU A 272 | 1.36A | 18.30 | None | ||
![]() | 3OCT_A_1N1A663_2 (TYROSINE-PROTEINKINASE BTK) | Dasatinib | 4 / 5 | PHE A 230ILE A 249MET A 264ASN A 221 | 1.50A | 20.25 | None | ||
![]() | 4G24_A_ACAA1004_1 (PENTATRICOPEPTIDEREPEAT-CONTAININGPROTEIN AT2G32230,MITOCHONDRIAL) | Aminocaproic Acid | 5 / 6 | ASN A 203LEU A 205VAL A 202ASP A 289GLU A 240 | 1.73A | 20.00 | None | ||
![]() | 2VCV_B_ASDB1224_1 (GLUTATHIONES-TRANSFERASE A3) | 4-Androstenedione | 4 / 6 | LEU A 250ALA A 260LEU A 262ALA A 266 | 1.28A | 21.29 | None | ||
![]() | 2BYT_A_LEUA1301_0 (LEUCYL-TRNASYNTHETASE) | L-Leucine | 4 / 7 | TYR A 126TYR A 161HIS A 172HIS A 163 | 1.77A | 15.99 | None | ||
![]() | 4FQS_A_LYAA302_1 (THYMIDYLATE SYNTHASE) | Pemetrexed | 5 / 12 | HIS A 246ILE A 249LEU A 253GLY A 251VAL A 297 | 1.50A | 22.49 | None | ||
![]() | 2Y05_A_RALA801_1 (PROSTAGLANDINREDUCTASE 1) | Raloxifene | 4 / 8 | ARG A 76SER A 81VAL A 18VAL A 91 | 1.26A | 22.68 | DMS A1002 (-3.5A)NoneNoneNone | ||
![]() | 3GRY_A_SAMA300_0 (DIMETHYLADENOSINETRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 152LEU A 115ASP A 153ASN A 95PRO A 99 | 1.54A | 24.02 | NoneNoneNoneDMS A1005 ( 4.6A)None | ||
![]() | 4C9N_A_CAMA1419_0 (CYTOCHROME P450) | Camphor | 4 / 8 | TRP A 207LEU A 272LEU A 271GLY A 275 | 1.19A | 21.96 | None | ||
![]() | 4LTW_A_STRA301_2 (ANCESTRAL STEROIDRECEPTOR 2) | Progesterone | 4 / 8 | ALA A 285MET A 276VAL A 296PHE A 3 | 1.44A | 22.19 | None | ||
![]() | 3UNI_A_SALA1344_1 (XANTHINEDEHYDROGENASE/OXIDASE) | Salicylic acid | 4 / 7 | PHE A 230THR A 201VAL A 204LEU A 208 | 1.18A | 14.04 | None | ||
![]() | 2ZM8_A_ACAA512_1 (6-AMINOHEXANOATE-DIMER HYDROLASE) | Aminocaproic Acid | 5 / 10 | ALA A 116TYR A 118SER A 144HIS A 163GLY A 124 | 1.49A | 21.57 | None | ||
![]() | 3RIF_A_IVMA403_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.52A | 23.59 | None | ||
![]() | 2QD4_B_CHDB927_0 (FERROCHELATASE) | Cholic Acid | 3 / 3 | LEU A 253PRO A 252ARG A 298 | 0.85A | 21.28 | NoneNoneDMS A1004 (-4.0A) | ||
![]() | 4MMD_A_29EA603_1 (TRANSPORTER) | Duloxetine | 5 / 10 | ASP A 289PRO A 241ALA A 234TYR A 239GLY A 109 | 1.61A | 19.58 | None | ||
![]() | 1RU9_H_BEZH601_0 (IMMUNOGLOBULINIGG2A, HEAVY CHAINIMMUNOGLOBULINIGG2A, LIGHT CHAIN) | Benzoic Acid | 5 / 9 | LEU A 177GLY A 179PHE A 181GLY A 174TYR A 161 | 1.77A | 23.4721.68 | None | ||
![]() | 1A28_B_STRB2_1 (PROGESTERONERECEPTOR) | Progesterone | 5 / 12 | LEU A 287LEU A 282LEU A 268MET A 264THR A 199 | 1.39A | 21.22 | None | ||
![]() | 6BQG_A_ERMA1201_1 (5-HYDROXYTRYPTAMINERECEPTOR 2C,SOLUBLECYTOCHROME B562) | Ergotamine | 6 / 12 | VAL A 296VAL A 204ALA A 266PHE A 219ASN A 214VAL A 212 | 1.79A | 20.18 | None | ||
![]() | 5UC1_A_486A801_1 (GLUCOCORTICOIDRECEPTOR) | Mifepristone | 5 / 12 | GLY A 71GLN A 19VAL A 18TRP A 31LEU A 67 | 1.48A | 19.22 | DMS A1005 (-3.8A)NoneNoneNoneDMS A1003 ( 4.9A) | ||
![]() | 4BLV_B_SAMB1281_0 (RIBOSOMAL RNA LARGESUBUNITMETHYLTRANSFERASE J) | S-Adenosylmethionine | 5 / 12 | GLY A 146GLY A 143SER A 144LEU A 177GLY A 149 | 1.51A | 21.20 | None | ||
![]() | 3TBG_B_RTZB1_1 (CYTOCHROME P450 2D6) | Thioridazine | 5 / 12 | GLY A 143LEU A 27PHE A 140ALA A 116SER A 147 | 1.28A | 21.99 | None | ||
![]() | 3AX7_A_SALA1336_1 (XANTHINEDEHYDROGENASE/OXIDASE) | Salicylic acid | 4 / 8 | PHE A 230THR A 201VAL A 204LEU A 208 | 1.16A | 14.04 | None | ||
![]() | 4Z7F_A_FOLA201_0 (FOLATE ECFTRANSPORTER) | Folic Acid | 5 / 12 | LEU A 271ASP A 229ALA A 234THR A 226ASN A 221 | 1.53A | 19.23 | None | ||
![]() | 3C7Q_A_XINA1172_1 (VASCULAR ENDOTHELIALGROWTH FACTORRECEPTOR 2) | Nintedanib | 6 / 12 | LEU A 115GLU A 14VAL A 157CYH A 16GLY A 29LEU A 30 | 1.68A | 22.35 | None | ||
![]() | 1ICT_D_T44D129_2 (TRANSTHYRETIN) | Levothyroxine | 4 / 7 | LEU A 262THR A 201SER A 254VAL A 202 | 1.30A | 17.21 | None | ||
![]() | 3KO0_B_TFPB201_1 (PROTEIN S100-A4) | Trifluoperazine | 4 / 8 | GLY A 146ILE A 136CYH A 128PHE A 150 | 0.94A | 16.95 | None | ||
![]() | 1P2Y_A_NCTA440_1 (CYTOCHROME P450-CAM) | Nicotine | 5 / 7 | LEU A 30VAL A 18GLY A 29ASP A 33VAL A 91 | 1.58A | 21.30 | None | ||
![]() | 5TWJ_C_SAMC201_0 (RIBOSOMAL RNA LARGESUBUNITMETHYLTRANSFERASE H) | S-Adenosylmethionine | 5 / 12 | LEU A 286LEU A 268SER A 267LEU A 208VAL A 204 | 1.33A | 18.36 | None | ||
![]() | 5YU9_A_1E8A1101_1 (EPIDERMAL GROWTHFACTOR RECEPTOR) | Ibrutinib | 5 / 12 | LEU A 167GLY A 170VAL A 171LYS A 137ASP A 197 | 1.55A | 21.68 | None | ||
![]() | 3HS6_A_EPAA1_1 (PROSTAGLANDIN G/HSYNTHASE 2) | Icosapent | 5 / 12 | VAL A 20VAL A 35GLY A 79SER A 81LEU A 87 | 1.52A | 19.73 | None | ||
![]() | 1MMK_A_H4BA1427_1 (PHENYLALANINE-4-HYDROXYLASE) | Sapropterin | 5 / 12 | TYR A 118LEU A 141GLU A 166HIS A 172TYR A 126 | 1.61A | 21.13 | None | ||
![]() | 5YBB_B_SAMB601_0 (TYPE IRESTRICTION-MODIFICATION SYSTEMMETHYLTRANSFERASESUBUNIT) | S-Adenosylmethionine | 5 / 12 | THR A 199ARG A 131PRO A 293LEU A 220PHE A 219 | 1.75A | 19.92 | None | ||
![]() | 2HA4_A_ACHA546_0 (ACETYLCHOLINESTERASE) | Acetylcholine | 4 / 8 | TYR A 54PHE A 181HIS A 164GLY A 146 | 1.55A | 20.59 | None | ||
![]() | 5FA8_A_SAMA301_1 (RIBOSOMAL PROTEINL11METHYLTRANSFERASE,PUTATIVE) | S-Adenosylmethionine | 3 / 3 | THR A 111ASP A 289GLU A 240 | 1.22A | 19.39 | None | ||
![]() | 4N48_B_SAMB601_0 (CAP-SPECIFIC MRNA(NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1) | S-Adenosylmethionine | 5 / 12 | CYH A 300GLY A 302ILE A 213THR A 257LEU A 253 | 1.25A | 19.73 | None | ||
![]() | 2XKK_E_MFXE1100_1 (TOPOISOMERASE IVDNA) | Moxifloxacin | 3 / 3 | ARG A 298GLU A 288SER A 301 | 1.40A | 17.67 | DMS A1004 (-4.0A)NoneNone | ||
![]() | 5M66_C_ADNC502_2 (ADENOSYLHOMOCYSTEINASE) | Adenosine | 3 / 3 | THR A 225GLU A 270LEU A 208 | 0.84A | 19.88 | None | ||
![]() | 6HU9_I_PCFI101_0 (CYTOCHROME B-C1COMPLEX SUBUNIT 1,MITOCHONDRIALCYTOCHROME B-C1COMPLEX SUBUNIT 9CYTOCHROME B-C1COMPLEX SUBUNITRIESKE,MITOCHONDRIAL) | Colfosceril palmitate | 5 / 11 | ASP A 92VAL A 73GLY A 71SER A 121VAL A 18 | 1.72A | 24.6419.2112.98 | NoneNoneDMS A1005 (-3.8A)NoneNone | ||
![]() | 2HMY_B_SAMB328_0 (PROTEIN(CYTOSINE-SPECIFICMETHYLTRANSFERASEHHAI)) | S-Adenosylmethionine | 5 / 12 | GLY A 109ASP A 289PRO A 293LEU A 250TYR A 182 | 1.51A | 20.23 | None | ||
![]() | 1TYL_C_TYLC100_1 (INSULIN) | Acetaminophen | 4 / 5 | CYH A 265ILE A 259LEU A 205ALA A 206 | 1.75A | 6.829.13 | None | ||
![]() | 3RIA_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 136GLY A 109THR A 292PHE A 294ILE A 106 | 1.53A | 23.59 | None | ||
![]() | 1ONI_G_BEZG513_0 (14.5 KDATRANSLATIONALINHIBITOR PROTEIN) | Benzoic Acid | 4 / 5 | PHE A 134ILE A 200PRO A 108GLU A 240 | 1.51A | 20.28 | None |