PDB ID: 5r7y Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARS-CoV-2 Gene names: 1a-1brep UniProt ID: P0DTD1 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '5r7y'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 3A9E_B_REAB1_1 (RETINOIC ACIDRECEPTOR ALPHA) | Tretinoin | 5 / 11 | LEU A 287ILE A 281PHE A 219VAL A 202LEU A 250 | 1.38A | 20.13 | None | ||
![]() | 4A6D_A_SAMA1350_0 (HYDROXYINDOLEO-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | TYR A 182LEU A 177GLY A 149ILE A 136PHE A 140 | 1.59A | 22.73 | None | ||
![]() | 2OW9_A_HAEA502_1 (COLLAGENASE 3) | Acetohydroxamic Acid | 4 / 6 | LEU A 141GLU A 166HIS A 172HIS A 163 | 1.51A | 19.40 | NoneDMS A1005 (-4.0A)NoneDMS A1005 (-4.1A) | ||
![]() | 4LZR_A_LOCA201_1 (BROMODOMAIN-CONTAINING PROTEIN 4) | Colchicine | 4 / 8 | VAL A 297LEU A 253ASP A 248ILE A 249 | 1.07A | 20.26 | None | ||
![]() | 3IK3_A_0LIA1_1 (PROTO-ONCOGENETYROSINE-PROTEINKINASE ABL1) | Ponatinib | 6 / 12 | LEU A 27VAL A 42ILE A 43HIS A 164LEU A 87ASP A 187 | 1.73A | 21.92 | CL A1006 ( 4.6A)NoneNoneNoneNoneNone | ||
![]() | 6BKK_B_308B101_0 (MATRIX PROTEIN 2) | Amantadine | 4 / 6 | SER A 121ALA A 116SER A 123SER A 147 | 1.53A | 6.71 | None | ||
![]() | 1I6V_C_RFPC1640_1 (DNA-DIRECTED RNAPOLYMERASE) | Rifampicin | 5 / 12 | GLN A 107GLN A 110ASP A 295GLU A 290ILE A 200 | 1.66A | 15.91 | NoneNoneDMS A1003 ( 4.5A)NoneNone | ||
![]() | 2VQ5_B_LDPB1197_1 (S-NORCOCLAURINESYNTHASE) | Dopamine | 4 / 7 | LEU A 268LEU A 272PHE A 230LEU A 205 | 1.30A | 20.52 | None | ||
![]() | 1K6C_B_MK1B902_1 (POL POLYPROTEIN) | Indinavir | 5 / 10 | LEU A 268ALA A 206VAL A 202ILE A 249GLY A 251 | 1.59A | 18.53 | None | ||
![]() | 5IEN_B_VDYB201_1 (CDL2.2) | Calcidiol | 5 / 10 | ILE A 281LEU A 282VAL A 296LEU A 253LEU A 271 | 1.56A | 16.23 | None | ||
![]() | 1ZGY_A_BRLA503_1 (PEROXISOMEPROLIFERATORACTIVATED RECEPTORGAMMA) | Rosiglitazone | 5 / 12 | GLY A 23CYH A 22LEU A 89LEU A 58HIS A 64 | 1.43A | 22.74 | None | ||
![]() | 3MBH_A_PXLA400_1 (PUTATIVEPHOSPHOMETHYLPYRIMIDINE KINASE) | Pyridoxal | 5 / 11 | VAL A 212THR A 257GLN A 256TYR A 209VAL A 296 | 1.77A | 21.89 | None | ||
![]() | 3H52_B_486B1_2 (GLUCOCORTICOIDRECEPTOR) | Mifepristone | 5 / 12 | MET A 82GLY A 79VAL A 77CYH A 44CYH A 38 | 1.46A | 21.45 | None | ||
![]() | 5LW1_H_ADNH401_1 (MITOGEN-ACTIVATEDPROTEIN KINASE 8) | Adenosine | 5 / 9 | VAL A 42LEU A 67ASN A 63VAL A 77LEU A 89 | 1.63A | 19.34 | None | ||
![]() | 5TUD_D_ERMD1201_1 (5-HYDROXYTRYPTAMINERECEPTOR 2B,SOLUBLECYTOCHROME B562CHIMERA) | Ergotamine | 5 / 12 | ASP A 295VAL A 204PHE A 3VAL A 212LEU A 282 | 1.45A | 21.54 | DMS A1003 ( 4.5A)NoneNoneNoneNone | ||
![]() | 5O96_C_SAMC501_0 (RIBOSOMAL RNA SMALLSUBUNITMETHYLTRANSFERASE E) | S-Adenosylmethionine | 5 / 7 | LEU A 253SER A 254LEU A 205THR A 292ALA A 206 | 1.35A | 20.06 | None | ||
![]() | 2AVD_B_SAMB601_1 (CATECHOL-O-METHYLTRANSFERASE) | S-Adenosylmethionine | 3 / 3 | SER A 284GLU A 290ASP A 197 | 1.33A | 22.26 | None | ||
![]() | 5HPU_C_IPHC101_0 (INSULIN, CHAIN AINSULIN, CHAIN B) | Phenol | 4 / 6 | CYH A 22LEU A 58CYH A 38LEU A 87 | 1.69A | 6.829.13 | None | ||
![]() | 4J4V_D_SVRD301_1 (NUCLEOCAPSID PROTEIN) | Suramin | 5 / 11 | GLY A 149ARG A 298ALA A 7VAL A 114ILE A 106 | 1.64A | 21.02 | NoneDMS A1003 (-3.7A)NoneNoneNone | ||
![]() | 3EL5_B_1UNB201_1 (PROTEASE) | Nelfinavir | 5 / 10 | ASP A 295ASP A 289VAL A 202ILE A 200ILE A 106 | 1.54A | 18.53 | DMS A1003 ( 4.5A)NoneNoneNoneNone | ||
![]() | 3W1W_A_CHDA1502_0 (FERROCHELATASE,MITOCHONDRIAL) | Cholic Acid | 5 / 12 | MET A 276LEU A 271LEU A 287SER A 284VAL A 212 | 1.68A | 20.69 | None | ||
![]() | 6HD4_A_STIA604_1 (TYROSINE-PROTEINKINASE ABL1) | Imatinib | 4 / 5 | TYR A 126VAL A 204PHE A 150GLY A 149 | 1.47A | 21.56 | None | ||
![]() | 4IG3_A_T27A601_1 (REVERSETRANSCRIPTASE/RIBONUCLEASE H) | Rilpivirine | 5 / 12 | PRO A 99LEU A 32VAL A 91VAL A 18TYR A 37 | 1.77A | 18.02 | None | ||
![]() | 3RIA_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 136GLY A 109THR A 292PHE A 294ILE A 106 | 1.51A | 23.59 | None | ||
![]() | 1N13_J_AG2J7013_1 (PYRUVOYL-DEPENDENTARGININEDECARBOXYLASE BETACHAINPYRUVOYL-DEPENDENTARGININEDECARBOXYLASE ALPHACHAIN) | Agmatine | 4 / 7 | LEU A 58LEU A 89GLY A 79GLU A 55 | 1.60A | 11.4715.36 | None | ||
![]() | 11GS_B_EAAB211_1 (GLUTATHIONES-TRANSFERASE) | Etacrynic acid | 4 / 7 | GLY A 149ILE A 106TYR A 182GLY A 174 | 1.29A | 21.21 | None | ||
![]() | 1GTI_C_CCSC47_0 (GLUTATHIONES-TRANSFERASE) | Carbocisteine | 4 / 6 | LEU A 177GLY A 179LYS A 88TYR A 37 | 1.32A | 22.33 | None | ||
![]() | 4AC9_C_DXCC1478_0 (MJ0495-LIKE PROTEIN) | Deoxycholic Acid | 4 / 7 | GLY A 258THR A 257SER A 267PHE A 219 | 1.33A | 20.36 | None | ||
![]() | 2ZZM_A_SAMA401_0 (UNCHARACTERIZEDPROTEIN MJ0883) | S-Adenosylmethionine | 5 / 12 | ARG A 217GLY A 258ILE A 213LEU A 220PHE A 219 | 1.47A | 20.39 | None | ||
![]() | 5TUD_A_ERMA2001_2 (5-HYDROXYTRYPTAMINERECEPTOR 2B,SOLUBLECYTOCHROME B562CHIMERA) | Ergotamine | 4 / 7 | THR A 175LEU A 32VAL A 68GLU A 14 | 1.28A | 21.54 | None | ||
![]() | 5KOC_B_SAMB401_0 (PAVINEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | SER A 123GLY A 143SER A 147THR A 26GLN A 19 | 1.43A | 22.11 | None CL A1006 (-3.2A)NoneNoneNone | ||
![]() | 3BVB_B_017B401_1 (PROTEASE(RETROPEPSIN)) | Darunavir | 5 / 12 | LEU A 32GLY A 29VAL A 91GLY A 71PRO A 96 | 1.29A | 15.62 | NoneNoneNoneDMS A1004 ( 4.7A)None | ||
![]() | 2BXP_A_P1ZA3001_1 (SERUM ALBUMIN) | Phenylbutazone | 6 / 12 | LEU A 208PHE A 219LEU A 205ALA A 260ILE A 259ALA A 266 | 1.51A | 17.80 | None | ||
![]() | 1GTI_F_CCSF47_0 (GLUTATHIONES-TRANSFERASE) | Carbocisteine | 4 / 5 | LEU A 177GLY A 179LYS A 88TYR A 37 | 1.32A | 22.33 | None | ||
![]() | 5G5G_A_ACTA1231_0 (PUTATIVE XANTHINEDEHYDROGENASE YAGRMOLYBDENUM-BINDINGSU SUBUNITPUTATIVE XANTHINEDEHYDROGENASE YAGTIRON-SULFUR-BINDINGSUBUNIT) | Acetic acid | 3 / 3 | ARG A 298THR A 292ASP A 295 | 1.76A | 21.0223.35 | DMS A1003 (-3.7A)NoneDMS A1003 ( 4.5A) | ||
![]() | 1VQ1_A_SAMA301_0 (N5-GLUTAMINEMETHYLTRANSFERASE,HEMK) | S-Adenosylmethionine | 5 / 12 | THR A 257GLY A 251ALA A 255PHE A 230ALA A 206 | 1.32A | 20.29 | None | ||
![]() | 5I8F_A_ML1A211_1 (PHENOLIC OXIDATIVECOUPLING PROTEIN) | Melatonin | 4 / 6 | VAL A 233LYS A 236ALA A 234TYR A 239 | 1.57A | 17.86 | None | ||
![]() | 5UBB_A_SAMA301_1 (ALPHA N-TERMINALPROTEINMETHYLTRANSFERASE 1B) | S-Adenosylmethionine | 4 / 5 | GLY A 179ARG A 40ASP A 176GLN A 107 | 1.23A | 21.45 | None | ||
![]() | 3GWX_A_EPAA1_2 (PROTEIN (PEROXISOMEPROLIFERATORACTIVATED RECEPTOR(PPAR-DELTA))) | Icosapent | 5 / 12 | CYH A 22THR A 24THR A 25HIS A 41LEU A 27 | 1.33A | 21.84 | NoneNoneJFM A1001 ( 3.9A)JFM A1001 (-3.8A) CL A1006 ( 4.6A) | ||
![]() | 4A7B_A_HAEA1273_1 (COLLAGENASE 3) | Acetohydroxamic Acid | 4 / 6 | LEU A 141GLU A 166HIS A 172HIS A 163 | 1.56A | 18.79 | NoneDMS A1005 (-4.0A)NoneDMS A1005 (-4.1A) | ||
![]() | 4ZJ8_A_SUVA2001_1 (HUMAN OX1R FUSIONPROTEIN TO P.ABYSIIGLYCOGEN SYNTHASE) | Suvorexant | 5 / 12 | ALA A 206VAL A 202GLN A 127PHE A 8ASN A 151 | 1.56A | 20.63 | NoneNoneDMS A1003 (-3.5A)DMS A1003 ( 3.8A)None | ||
![]() | 5N0W_A_SAMA501_0 (PEPTIDEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | ILE A 136TYR A 182GLY A 174HIS A 164TYR A 126 | 1.39A | 22.48 | None | ||
![]() | 4MS4_A_2C0A501_1 (GAMMA-AMINOBUTYRICACID TYPE B RECEPTORSUBUNIT 1) | Baclofen | 4 / 8 | SER A 147SER A 144TYR A 126GLU A 166 | 1.59A | 21.18 | NoneDMS A1005 (-3.7A)NoneDMS A1005 (-4.0A) | ||
![]() | 3KEC_A_HAEA272_1 (COLLAGENASE 3) | Acetohydroxamic Acid | 4 / 5 | LEU A 141GLU A 166HIS A 172HIS A 163 | 1.57A | 18.42 | NoneDMS A1005 (-4.0A)NoneDMS A1005 (-4.1A) | ||
![]() | 1GTI_D_CCSD47_0 (GLUTATHIONES-TRANSFERASE) | Carbocisteine | 4 / 7 | LEU A 177GLY A 179LYS A 88TYR A 37 | 1.31A | 22.33 | None | ||
![]() | 6HD4_B_STIB602_1 (TYROSINE-PROTEINKINASE ABL1) | Imatinib | 4 / 6 | LEU A 30TYR A 37VAL A 186PHE A 159 | 1.34A | 21.56 | None | ||
![]() | 1N13_H_AG2H7012_1 (PYRUVOYL-DEPENDENTARGININEDECARBOXYLASE ALPHACHAINPYRUVOYL-DEPENDENTARGININEDECARBOXYLASE BETACHAIN) | Agmatine | 4 / 6 | GLU A 55LEU A 58LEU A 89GLY A 79 | 1.61A | 15.3611.47 | None | ||
![]() | 4KOU_A_C04A207_1 (UNCHARACTERIZEDPROTEIN) | Cefixime | 3 / 3 | GLY A 109GLU A 290THR A 111 | 0.98A | 18.64 | None | ||
![]() | 3RQW_C_ACHC323_0 (ELIC PENTAMERICLIGAND GATED IONCHANNEL FROM ERWINIACHRYSANTHEMI) | Acetylcholine | 4 / 8 | PHE A 159TYR A 101TYR A 37LEU A 30 | 1.30A | 20.51 | None | ||
![]() | 3RHW_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.51A | 23.59 | None | ||
![]() | 4D1Y_A_RBFA1176_1 (PUTATIVE PROTEASE I) | Riboflavin | 4 / 8 | ASN A 214TRP A 207GLN A 299THR A 292 | 1.57A | 19.16 | None | ||
![]() | 4AE1_B_NCAB1536_0 (DIPHTHERIA TOXIN) | Nicotinamide | 4 / 5 | HIS A 164GLY A 174TYR A 182GLU A 178 | 1.71A | 21.31 | None | ||
![]() | 3RQW_I_ACHI323_0 (ELIC PENTAMERICLIGAND GATED IONCHANNEL FROM ERWINIACHRYSANTHEMI) | Acetylcholine | 4 / 8 | PHE A 159TYR A 101TYR A 37LEU A 30 | 1.30A | 20.51 | None | ||
![]() | 1OQ5_A_CELA701_2 (CARBONIC ANHYDRASEII) | Celecoxib | 4 / 4 | HIS A 41VAL A 42THR A 175LEU A 30 | 1.62A | 22.99 | JFM A1001 (-3.8A)NoneNoneNone | ||
![]() | 2IEO_A_017A402_1 (PROTEASE) | Darunavir | 5 / 12 | LEU A 32GLY A 29VAL A 91GLY A 71PRO A 96 | 1.32A | 14.78 | NoneNoneNoneDMS A1004 ( 4.7A)None | ||
![]() | 1QZR_B_CDXB901_1 (DNA TOPOISOMERASE II) | Dexrazoxane | 4 / 7 | HIS A 41THR A 25ASN A 119GLN A 19 | 1.37A | 18.76 | JFM A1001 (-3.8A)JFM A1001 ( 3.9A)NoneNone | ||
![]() | 6DJ2_B_AB1B201_1 (HIV-1 PROTEASE) | Lopinavir | 5 / 12 | ASP A 295ASP A 289VAL A 202ILE A 200ILE A 106 | 1.37A | 15.62 | DMS A1003 ( 4.5A)NoneNoneNoneNone | ||
![]() | 6DJ1_B_AB1B201_1 (HIV-1 PROTEASE) | Lopinavir | 5 / 12 | ASP A 295ASP A 289VAL A 202ILE A 200ILE A 106 | 1.37A | 15.62 | DMS A1003 ( 4.5A)NoneNoneNoneNone | ||
![]() | 5EWJ_D_QELD503_1 (NMDA GLUTAMATERECEPTOR SUBUNITGLUTAMATE RECEPTORIONOTROPIC, NMDA 2B) | Ifenprodil | 5 / 12 | TYR A 239THR A 198LEU A 286PRO A 132ILE A 200 | 1.61A | 20.0520.95 | None | ||
![]() | 4DO3_A_0LAA602_1 (FATTY-ACID AMIDEHYDROLASE 1) | Carprofen | 4 / 5 | LEU A 242LEU A 250MET A 264TRP A 207 | 1.80A | 19.65 | None | ||
![]() | 3RIF_A_IVMA403_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.50A | 23.59 | None |