PDB ID: 3vb7 Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARSr-CoV Gene names: 1a UniProt ID: P0C6U8 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '3vb7'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 3EEY_B_SAMB300_0 (PUTATIVE RRNAMETHYLASE) | S-Adenosylmethionine | 5 / 12 | THR A 280GLY A 283ASN A 214ASP A 216ILE B 286 | 1.46A | 20.32 | None | ||
![]() | 5KR0_A_478A101_2 (PROTEASE E35D-APV) | Amprenavir | 5 / 9 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.49A | 3.90 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 5X1F_J_CHDJ101_0 (CYTOCHROME C OXIDASESUBUNIT 1CYTOCHROME C OXIDASESUBUNIT 7A1,MITOCHONDRIAL) | Cholic Acid | 4 / 6 | LEU F 4TYR B 161THR B 135LEU B 167 | 1.58A | 1.546.25 | 0JU F 5 ( 4.3A)NoneNoneNone | ||
![]() | 1T46_A_STIA3_1 (HOMO SAPIENS V-KITHARDY-ZUCKERMAN 4FELINE SARCOMA VIRALONCOGENE HOMOLOG) | Imatinib | 5 / 12 | ALA B 211LEU B 253GLY B 2ASP B 295PHE B 291 | 1.36A | 19.65 | None | ||
![]() | 4R3A_B_RBFB402_2 (BLUE-LIGHT-ACTIVATEDHISTIDINE KINASE 2) | Riboflavin | 5 / 12 | ARG A 217ILE A 213ILE A 281LEU A 282GLY A 2 | 1.14A | 20.71 | None | ||
![]() | 3LZV_A_017A200_1 (HIV-1 PROTEASE) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.44A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 4PGF_A_ADNA502_1 (ADENOSYLHOMOCYSTEINASE) | Adenosine | 5 / 12 | LEU F 4HIS B 164ASP B 187LEU B 86GLY B 146 | 1.77A | 4.69 | 0JU F 5 ( 4.3A)NoneNoneNoneNone | ||
![]() | 2OPX_A_DXCA1003_0 (ALDEHYDEDEHYDROGENASE A) | Deoxycholic Acid | 4 / 5 | ILE B 286LEU B 287ASP B 216PHE B 219 | 1.57A | 22.41 | None | ||
![]() | 3OXW_B_017B200_1 (HIV-1 PROTEASE) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.43A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 2Z54_A_AB1A200_1 (HIV-1 PROTEASE) | Lopinavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.35A | 16.43 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 4DQB_B_017B101_2 (ASPARTYL PROTEASE) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.46A | 3.90 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 1N13_F_AG2F7016_1 (PYRUVOYL-DEPENDENTARGININEDECARBOXYLASE BETACHAINPYRUVOYL-DEPENDENTARGININEDECARBOXYLASE ALPHACHAIN) | Agmatine | 4 / 8 | LEU F 4LEU B 27ILE B 43MET B 49 | 1.35A | 5.003.92 | 0JU F 5 ( 4.3A)NoneNoneNone | ||
![]() | 2WEK_B_DIFB1376_1 (ZINC-BINDING ALCOHOLDEHYDROGENASEDOMAIN-CONTAININGPROTEIN 2) | Diclofenac | 4 / 7 | GLY A 71ALA A 70LEU A 75SER A 121 | 1.12A | 23.51 | None | ||
![]() | 3EL1_A_DR7A100_2 (PROTEASE) | Atazanavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.35A | 17.48 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 4M6K_A_FOLA201_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.42A | 1.79 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 3OXW_D_017D200_1 (HIV-1 PROTEASE) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.44A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 2IEN_B_017B402_1 (PROTEASE) | Darunavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.32A | 18.02 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 3ZOA_A_ACRA1587_2 (TREHALOSESYNTHASE/AMYLASETRES) | Acarbose | 3 / 3 | ARG B 298PHE B 8PRO B 9 | 0.93A | 17.91 | None | ||
![]() | 3V8V_A_SAMA801_0 (RIBOSOMAL RNA LARGESUBUNITMETHYLTRANSFERASE L) | S-Adenosylmethionine | 5 / 12 | ILE B 286GLY A 283SER A 284ASP A 216VAL B 171 | 1.25A | 18.23 | None | ||
![]() | 2QQD_A_AG2A671_1 (PYRUVOYL-DEPENDENTARGININEDECARBOXYLASE (EC4.1.1.19) (PVLARGDC)) | Agmatine | 4 / 7 | LEU F 4LEU B 27ILE B 43MET B 49 | 1.36A | 4.882.97 | 0JU F 5 ( 4.3A)NoneNoneNone | ||
![]() | 3OXV_B_478B200_1 (HIV-1 PROTEASE) | Amprenavir | 5 / 9 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.46A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 3D1Z_B_017B201_2 (HIV-1 PROTEASE) | Darunavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.36A | 17.67 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 4GKH_J_KANJ301_1 (AMINOGLYCOSIDE3'-PHOSPHOTRANSFERASE APHA1-IAB) | Kanamycin | 4 / 6 | ASP A 289ASN A 238ASP A 197GLU A 240 | 1.79A | 22.96 | None | ||
![]() | 4KFJ_B_FOLB202_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.44A | 1.80 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 1HXW_B_RITB301_2 (HIV-1 PROTEASE) | Ritonavir | 5 / 11 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.48A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 4J5J_B_478B401_1 (PROTEASE) | Amprenavir | 5 / 8 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.50A | 3.90 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 2IDW_B_017B401_2 (PROTEASE) | Darunavir | 5 / 9 | ASP A 216GLY A 215ALA A 211ILE A 259ILE A 281 | 1.56A | 18.37 | None | ||
![]() | 6DH6_A_017A104_1 (PROTEASE) | Darunavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.32A | 16.96 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 2XCT_G_CPFG1020_1 (DNA GYRASE SUBUNITB, DNA GYRASESUBUNIT A) | Ciprofloxacin | 3 / 3 | ARG B 298GLY B 302SER A 147 | 0.39A | 18.36 | None | ||
![]() | 3MWS_B_017B201_1 (HIV-1 PROTEASE) | Darunavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.32A | 21.17 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 4KEB_B_FOLB202_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.42A | 1.80 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 5W4Z_A_RBFA502_1 (RIBOFLAVIN LYASE) | Riboflavin | 6 / 12 | PHE B 291ALA B 7GLY A 124PHE B 3ALA B 210SER A 123 | 1.50A | 20.39 | None | ||
![]() | 4DQE_B_017B101_2 (ASPARTYL PROTEASE) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.47A | 3.90 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 5VOP_B_C2FB3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | LYS E 2VAL A 68LEU A 89GLY A 29SER A 147 | 1.48A | 2.70 | None | ||
![]() | 3EEY_F_SAMF300_0 (PUTATIVE RRNAMETHYLASE) | S-Adenosylmethionine | 5 / 12 | THR A 280GLY A 283ASN A 214ASP A 216ILE B 286 | 1.46A | 20.32 | None | ||
![]() | 2W3B_A_FOLA401_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.45A | 1.79 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 1N13_J_AG2J7013_1 (PYRUVOYL-DEPENDENTARGININEDECARBOXYLASE BETACHAINPYRUVOYL-DEPENDENTARGININEDECARBOXYLASE ALPHACHAIN) | Agmatine | 4 / 7 | LEU E 4ASP A 187MET A 49ARG A 40 | 1.59A | 5.003.92 | 0JU E 5 ( 4.2A)NoneNoneNone | ||
![]() | 4DQH_B_017B101_2 (WILD-TYPE HIV-1PROTEASE DIMER) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.45A | 3.90 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 5T8H_B_478B401_2 (PROTEASE) | Amprenavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.35A | 15.46 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 4AZS_A_SAMA1475_0 (METHYLTRANSFERASEWBDD) | S-Adenosylmethionine | 5 / 12 | ASN A 214ARG A 4GLU B 290VAL B 171HIS B 172 | 1.75A | 19.26 | NoneNoneNoneNone0JU F 5 ( 4.7A) | ||
![]() | 5T8H_B_478B401_1 (PROTEASE) | Amprenavir | 6 / 12 | ASP A 216GLY A 215ALA A 211VAL A 296ILE A 259ILE A 281 | 1.73A | 15.46 | None | ||
![]() | 5JSE_A_1GNA608_1 (PHIAB6 TAILSPIKE) | Glucosamine | 3 / 3 | THR B 304SER A 123TYR A 118 | 1.77A | 18.94 | None | ||
![]() | 2OAX_E_SNLE5001_1 (MINERALOCORTICOIDRECEPTOR) | Spironolactone | 5 / 12 | LEU E 4MET A 82LEU A 57LEU A 87PHE A 181 | 1.76A | 20.00 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 2W3B_B_FOLB401_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.43A | 1.79 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 2HS2_A_017A201_2 (PROTEASE) | Darunavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.31A | 15.97 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 3NU6_B_478B401_2 (PROTEASE) | Amprenavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.48A | 3.90 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 4Q1W_A_017A104_1 (ASPARTYL PROTEASE) | Darunavir | 5 / 9 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.44A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 2W3M_A_FOLA1188_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.44A | 1.79 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 2VH3_B_DAHB2_1 (RANASMURFIN) | Levodopa | 4 / 8 | ALA F 2ALA B 193GLY B 183ALA B 173 | 1.14A | 2.88 | NoneNoneEDO B 401 (-3.5A)None | ||
![]() | 2AVV_E_MK1E902_1 (POL POLYPROTEIN) | Indinavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.33A | 15.62 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 3D20_A_017A201_1 (HIV-1 PROTEASE) | Darunavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.34A | 16.26 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 5VOO_E_C2FE3001_0 (5-METHYLTETRAHYDROFOLATE HOMOCYSTEINES-METHYLTRANSFERASE) | Levomefolic acid | 5 / 12 | LYS F 2VAL B 68LEU B 89GLY B 29SER B 147 | 1.54A | 2.70 | None | ||
![]() | 2OAX_D_SNLD4001_1 (MINERALOCORTICOIDRECEPTOR) | Spironolactone | 5 / 12 | LEU E 4MET A 82LEU A 57LEU A 87PHE A 181 | 1.75A | 20.00 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 5JSD_A_1GNA607_1 (PHIAB6 TAILSPIKE) | Glucosamine | 3 / 3 | THR B 304SER A 123TYR A 118 | 1.78A | 18.94 | None | ||
![]() | 2QHC_B_AB1B9001_2 (PROTEASE RETROPEPSIN) | Lopinavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.38A | 16.08 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 1N13_L_AG2L7014_1 (PYRUVOYL-DEPENDENTARGININEDECARBOXYLASE BETACHAINPYRUVOYL-DEPENDENTARGININEDECARBOXYLASE ALPHACHAIN) | Agmatine | 4 / 7 | LEU F 4LEU B 27ILE B 43MET B 49 | 1.37A | 5.003.92 | 0JU F 5 ( 4.3A)NoneNoneNone | ||
![]() | 3OY4_B_017B200_2 (HIV-1 PROTEASE) | Darunavir | 5 / 10 | LEU E 4GLY A 174ALA A 173GLY A 138VAL E 3 | 1.46A | 8.82 | 0JU E 5 ( 4.2A)NoneNoneNoneNone | ||
![]() | 2R5P_B_MK1B902_2 (PROTEASE) | Indinavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.37A | 17.23 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 2NNK_A_ROCA401_3 (PROTEASE) | Saquinavir | 5 / 12 | ARG B 298GLY B 2ASP B 216ILE B 281VAL B 296 | 1.39A | 14.29 | None | ||
![]() | 2B7Z_B_MK1B200_1 (HIV-1 PROTEASE) | Indinavir | 5 / 12 | GLY B 195ALA B 194ASP B 197GLY B 183ALA F 2 | 1.40A | 17.13 | GOL B 403 (-3.5A)GOL B 403 (-4.2A)NoneEDO B 401 (-3.5A)None | ||
![]() | 2W3M_B_FOLB1188_0 (DIHYDROFOLATEREDUCTASE) | Folic Acid | 5 / 12 | ALA F 2LEU B 167PHE B 185PHE B 181THR B 190 | 1.45A | 1.79 | NoneNoneGOL B 403 (-4.5A)NoneNone | ||
![]() | 1HSG_B_MK1B902_2 (HIV-1 PROTEASE) | Indinavir | 5 / 12 | ARG B 279ASP B 216GLY B 215ALA B 211ILE B 281 | 1.36A | 16.43 | EDO B 402 (-3.8A)NoneNoneNoneNone | ||
![]() | 3EEY_A_SAMA300_0 (PUTATIVE RRNAMETHYLASE) | S-Adenosylmethionine | 5 / 12 | THR A 280GLY A 283ASN A 214ASP A 216ILE B 286 | 1.45A | 20.32 | None |