PDB ID: 3vb5 Macromolecule: 3C-LIKE PROTEINASE Source Organism: SARSr-CoV Gene names: 1a UniProt ID: P0C6U8 |
SIMILAR PATTERN OF AMINO ACIDS MAPPED TO PDBID '3vb5'
1) User may click on the DrReposER ID (the first column) to get information on the binding sites and drug molecule.2) Click View (the second last column) to view matched residues and superposition in the NGL viewer (upper right part).3) User may also click on the Dock (the last column) to get script for molecular docking in UCSF Chimera through AutoDock Vina.DrReposER ID / Desc. | Drug | Res. Matches |
View | Interface | RMSD | Seq. Identity (%) |
HETATM | Dock | |
---|---|---|---|---|---|---|---|---|---|
![]() | 1Z9H_D_IMND476_1 (MEMBRANE-ASSOCIATEDPROSTAGLANDIN ESYNTHASE-2) | Indomethacin | 5 / 12 | PRO B 39PRO B 52VAL B 20ILE B 43LEU B 89 | 1.55A | 22.06 | None | ||
![]() | 4WNU_C_QDNC602_1 (CYTOCHROME P450 2D6) | Quinidine | 5 / 11 | GLY A 143LEU A 27PHE A 140ALA A 116SER A 147 | 1.34A | 22.34 | 0JU E 5 (-3.7A)NoneNoneNoneNone | ||
![]() | 4QA2_A_SHHA404_2 (HISTONE DEACETYLASE8) | Vorinostat | 3 / 3 | PRO A 108MET A 130TYR A 182 | 1.73A | 21.67 | None | ||
![]() | 3K13_C_THHC643_1 (5-METHYLTETRAHYDROFOLATE-HOMOCYSTEINEMETHYLTRANSFERASE) | Levomefolic acid | 3 / 3 | ASN A 203ASP A 295ARG A 105 | 0.93A | 21.90 | None | ||
![]() | 3RIA_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE B 136GLY B 109THR B 292PHE B 294ILE B 106 | 1.59A | 24.32 | None | ||
![]() | 3UFO_A_H4BA760_1 (NITRIC OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | ARG B 298VAL B 157PHE B 305GLU A 14 | 1.65A | 21.10 | None | ||
![]() | 3KO0_C_TFPC201_1 (PROTEIN S100-A4) | Trifluoperazine | 5 / 9 | PHE B 150GLY B 146ILE B 136CYH B 128PHE B 8 | 1.79A | 16.27 | None | ||
![]() | 3PWW_A_ROCA1001_1 (ENDOTHIAPEPSIN) | Saquinavir | 5 / 12 | GLY A 149PHE A 103LEU A 86PHE A 140ILE A 136 | 1.50A | 22.40 | None | ||
![]() | 2BXM_A_IMNA2002_1 (SERUM ALBUMIN) | Indomethacin | 5 / 11 | ARG B 88LEU B 87HIS B 164LEU F 4GLY B 146 | 1.73A | 18.70 | NoneNoneNone0JU F 5 ( 4.1A)None | ||
![]() | 4ZZB_C_ACTC401_0 (PROTON-GATED IONCHANNEL) | Acetic acid | 4 / 7 | ILE A 136ARG B 4VAL A 171GLU A 290 | 1.48A | 21.68 | None | ||
![]() | 4LL3_A_017A202_2 (PROTEASE) | Darunavir | 5 / 9 | ARG A 217VAL A 296GLY A 251VAL A 212ILE A 213 | 1.56A | 16.78 | None | ||
![]() | 4O1E_A_C2FA3000_1 (DIHYDROPTEROATESYNTHASE DHPS) | Levomefolic acid | 3 / 3 | LYS A 100ASN A 95ASP A 155 | 1.09A | 21.61 | None | ||
![]() | 5EU8_B_010B6_0 (N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDEMAIN PROTEASE) | Benzyl alcohol | 4 / 5 | LEU B 87HIS B 41THR B 25CYH B 38 | 1.31A | 45.31 | None | ||
![]() | 3RFA_A_SAMA406_0 (RIBOSOMAL RNA LARGESUBUNITMETHYLTRANSFERASE N) | S-Adenosylmethionine | 5 / 12 | PHE A 159PRO A 122VAL A 157ILE A 152ASN A 151 | 1.30A | 20.53 | None | ||
![]() | 4V04_A_0LIA1772_2 (FIBROBLAST GROWTHFACTOR RECEPTOR 1(FMS-RELATEDTYROSINE KINASE 2,PFEIFFER SYNDROME),ISOFORM CRA_B) | Ponatinib | 4 / 8 | TYR B 54ARG B 76LEU B 87PHE B 66 | 1.31A | 19.82 | None | ||
![]() | 2G6K_A_H4BA760_1 (NITRIC-OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | ARG B 298VAL B 157PHE B 305GLU A 14 | 1.63A | 21.10 | None | ||
![]() | 3NY4_A_SMXA310_1 (BETA-LACTAMASE) | Cefamandole | 4 / 8 | LEU F 4ALA B 191THR B 190GLY B 174 | 1.21A | 1.13 | 0JU F 5 ( 4.1A)PHQ F 1 ( 4.7A)NoneNone | ||
![]() | 5OG9_B_TESB503_1 (-) | Testosterone | 5 / 8 | ILE A 281VAL A 212THR A 224ALA A 266LEU A 220 | 1.46A | 21.96 | None | ||
![]() | 3JX6_A_H4BA760_1 (NITRIC OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | ARG B 298VAL B 157PHE B 305GLU A 14 | 1.68A | 21.33 | None | ||
![]() | 4M11_C_MXMC606_2 (PROSTAGLANDIN G/HSYNTHASE 2) | Meloxicam | 3 / 3 | LEU A 282ARG A 4MET B 130 | 1.28A | 20.21 | None | ||
![]() | 3CLB_D_TMQD614_1 (DHFR-TS) | Trimetrexate | 5 / 10 | VAL B 171ILE B 200ASP B 197ILE B 106ILE B 136 | 1.53A | 19.59 | None | ||
![]() | 3IV6_A_SAMA301_1 (PUTATIVEZN-DEPENDENT ALCOHOLDEHYDROGENASE) | S-Adenosylmethionine | 3 / 3 | SER A 94ASP A 33ASP A 92 | 1.35A | 20.71 | None | ||
![]() | 3QOW_A_SAMA417_0 (HISTONE-LYSINEN-METHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | GLY B 11GLU B 14GLY A 124VAL B 125PHE B 305 | 1.41A | 20.05 | None | ||
![]() | 2NV4_A_ACTA148_0 (UPF0066 PROTEINAF_0241) | Acetic acid | 3 / 3 | VAL A 13GLU B 14GLU A 14 | 1.66A | 16.99 | None | ||
![]() | 5OM2_B_DXTB501_1 (ALPHA-1-ANTICHYMOTRYPSIN) | Doxycycline | 5 / 9 | VAL B 171LEU B 167ALA B 193PHE B 185HIS B 134 | 1.55A | 21.707.82 | NoneNoneNoneNoneEDO B 402 (-3.6A) | ||
![]() | 4WNU_A_QDNA602_1 (CYTOCHROME P450 2D6) | Quinidine | 5 / 11 | GLY A 143LEU A 27PHE A 140ALA A 116SER A 147 | 1.24A | 22.34 | 0JU E 5 (-3.7A)NoneNoneNoneNone | ||
![]() | 4HYT_C_OBNC2004_2 (SODIUM/POTASSIUM-TRANSPORTING ATPASESUBUNIT ALPHA-1) | Ouabain | 4 / 4 | PRO A 132ASP A 197ASN A 133ILE A 136 | 1.68A | 13.85 | None | ||
![]() | 1R55_A_097A518_1 (ADAM 33) | Marimastat | 5 / 10 | ALA B 193HIS B 172HIS B 163ALA B 173THR B 135 | 1.64A | 18.47 | None0JU F 5 ( 4.7A)0JU F 5 (-4.0A)NoneNone | ||
![]() | 3LB3_A_4CHA191_0 (DEHALOPEROXIDASE A) | Parachlorophenol | 4 / 6 | PHE B 305PHE B 8THR B 304VAL B 303 | 1.48A | 19.34 | None | ||
![]() | 3ELZ_A_CHDA200_0 (ILEAL BILEACID-BINDING PROTEIN) | Cholic Acid | 4 / 5 | PRO B 122VAL A 13GLY A 15LYS A 97 | 1.50A | 19.13 | None | ||
![]() | 4HYT_A_OBNA1104_2 (SODIUM/POTASSIUM-TRANSPORTING ATPASESUBUNIT ALPHA-1) | Ouabain | 4 / 5 | PRO A 132ASP A 197ASN A 133ILE A 136 | 1.68A | 13.85 | None | ||
![]() | 5GWY_E_010E6_0 (N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDEMAIN PROTEASE) | Benzyl alcohol | 4 / 4 | THR A 25LEU A 27HIS A 41GLY A 143 | 0.28A | 43.65 | NoneNoneNone0JU E 5 (-3.7A) | ||
![]() | 1UOB_A_PNNA1311_0 (DEACETOXYCEPHALOSPORIN C SYNTHETASE) | Benzylpenicillin | 5 / 12 | LEU B 253ASP B 248LEU B 227VAL B 261ILE B 249 | 1.41A | 22.97 | NoneEDO B 401 (-4.3A)NoneNoneNone | ||
![]() | 5KB6_B_ADNB401_1 (ADENOSINE KINASE) | Adenosine | 5 / 12 | GLY A 215ARG A 217GLY A 2ALA A 210ILE A 213 | 1.41A | 22.43 | None | ||
![]() | 3DQR_A_H4BA760_1 (NITRIC OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | ARG B 298VAL B 157PHE B 305GLU A 14 | 1.65A | 21.33 | None | ||
![]() | 5OG9_A_TESA504_1 (-) | Testosterone | 5 / 8 | ILE A 281VAL A 212THR A 224ALA A 266LEU A 220 | 1.43A | 21.96 | None | ||
![]() | 1DZ6_A_CAMA502_0 (CYTOCHROME P450-CAM) | Camphor | 4 / 5 | PHE B 294LEU B 202VAL B 296ASP B 295 | 1.78A | 20.56 | None | ||
![]() | 4LS7_A_1X9A504_1 (3-OXOACYL-[ACYL-CARRIER-PROTEIN]SYNTHASE 2) | Cerulenin | 5 / 12 | GLY B 11GLU B 14PHE B 150GLY A 124PHE B 8 | 1.43A | 22.58 | None | ||
![]() | 1NW5_A_SAMA401_0 (MODIFICATIONMETHYLASE RSRI) | S-Adenosylmethionine | 5 / 12 | CYH B 300PHE B 3GLY A 138VAL A 171ALA A 116 | 1.33A | 22.16 | None | ||
![]() | 2HA4_B_ACHB603_0 (ACETYLCHOLINESTERASE) | Acetylcholine | 4 / 7 | TYR B 161TYR B 118TYR B 126GLY B 124 | 1.65A | 19.81 | None | ||
![]() | 2YS6_A_GLYA431_0 (PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE) | Glycine | 4 / 8 | ASN A 214GLY B 170PRO B 168GLU B 166 | 1.48A | 21.10 | NoneNonePHQ F 1 (-3.3A)0JU F 5 (-4.0A) | ||
![]() | 4YSH_B_GLYB401_0 (GLYCINE OXIDASE) | Glycine | 4 / 6 | PHE B 305GLY A 124ALA B 7ARG B 298 | 1.10A | 20.00 | None | ||
![]() | 1ZQ9_A_SAMA4000_1 (PROBABLEDIMETHYLADENOSINETRANSFERASE) | S-Adenosylmethionine | 3 / 3 | GLY B 2GLU A 166ASN B 214 | 1.41A | 20.68 | None0JU E 5 (-3.5A)None | ||
![]() | 2E1Q_A_SALA2006_1 (XANTHINEDEHYDROGENASE/OXIDASE) | Salicylic acid | 4 / 6 | PHE B 230THR B 201VAL B 204LEU B 208 | 1.11A | 12.56 | None | ||
![]() | 3V4T_A_ACTA504_0 (UDP-N-ACETYLGLUCOSAMINE1-CARBOXYVINYLTRANSFERASE) | Acetic acid | 3 / 3 | THR B 199VAL B 204GLU B 240 | 1.21A | 22.49 | None | ||
![]() | 2ZIA_B_CL9B401_1 (DEOXYCYTIDINE KINASE) | Cladribine | 5 / 12 | VAL A 125LEU A 115ARG B 298PHE B 305GLU A 14 | 1.73A | 19.76 | None | ||
![]() | 5ESK_A_1YNA701_2 (LANOSTEROL 14-ALPHADEMETHYLASE) | Itraconazole | 4 / 4 | ALA F 2PRO B 52LEU B 87HIS B 41 | 1.52A | 3.12 | PHQ F 1 ( 3.6A)NoneNoneNone | ||
![]() | 2UVN_A_ECNA1409_1 (CYTOCHROME P450 130) | Econazole | 5 / 12 | LEU A 57MET A 49THR A 25THR A 21GLY A 23 | 1.44A | 20.43 | None | ||
![]() | 3JT3_B_H4BB760_1 (NITRIC OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | PHE B 305GLU A 14ARG B 298VAL B 157 | 1.67A | 21.10 | None | ||
![]() | 3CS9_A_NILA600_1 (PROTO-ONCOGENETYROSINE-PROTEINKINASE ABL1) | Nilotinib | 5 / 10 | LEU A 253TYR A 209VAL A 296LYS B 137ASP A 216 | 1.63A | 20.72 | None | ||
![]() | 2TCT_A_CTCA222_0 (TETRACYCLINEREPRESSOR) | Chlortetracycline | 5 / 12 | HIS B 64ARG B 76GLN B 74VAL B 68SER B 62 | 1.76A | 20.18 | None | ||
![]() | 1VE3_A_SAMA302_0 (HYPOTHETICAL PROTEINPH0226) | S-Adenosylmethionine | 5 / 12 | ALA A 173GLY A 183ALA E 2ILE A 136HIS A 164 | 1.58A | 22.64 | NoneNonePHQ E 1 ( 3.7A)NoneNone | ||
![]() | 5L17_A_ZMRA512_1 (NEURAMINIDASE) | Zanamivir | 5 / 12 | ARG A 131GLU A 290ARG B 4GLU A 288ALA A 206 | 1.80A | 21.29 | None | ||
![]() | 4R1Z_B_AERB601_1 (CYP17A1 PROTEIN) | Abiraterone | 4 / 7 | ALA F 2GLY B 174ALA B 173THR B 135 | 1.01A | 3.30 | PHQ F 1 ( 3.6A)NoneNoneNone | ||
![]() | 3UFR_B_H4BB760_1 (NITRIC OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | PHE B 305GLU A 14ARG B 298VAL B 157 | 1.65A | 21.10 | None | ||
![]() | 3RIF_A_IVMA403_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE A 106ILE A 136GLY A 109THR A 292PHE A 294 | 1.66A | 24.32 | None | ||
![]() | 3SXJ_A_SAMA258_0 (PUTATIVEMETHYLTRANSFERASE) | S-Adenosylmethionine | 5 / 12 | GLY A 2GLY B 170LEU B 141SER A 301TYR B 126 | 1.49A | 19.03 | None | ||
![]() | 4U0I_A_0LIA1001_1 (MAST/STEM CELLGROWTH FACTORRECEPTORKIT,MAST/STEM CELLGROWTH FACTORRECEPTOR KIT) | Ponatinib | 5 / 10 | VAL F 3LEU A 282VAL B 171ARG A 298ILE A 213 | 1.60A | 4.69 | PHQ F 1 ( 4.4A)NoneNoneNoneNone | ||
![]() | 3JUS_B_ECNB602_1 (LANOSTEROL 14-ALPHADEMETHYLASE) | Econazole | 5 / 9 | THR A 199TYR A 239PHE A 230ALA A 206ILE A 281 | 1.62A | 20.21 | None | ||
![]() | 3RHW_A_IVMA348_0 (AVERMECTIN-SENSITIVEGLUTAMATE-GATEDCHLORIDE CHANNELGLUCL ALPHA) | Ivermectin | 5 / 12 | ILE B 106ILE B 136GLY B 109THR B 292PHE B 294 | 1.60A | 24.32 | None | ||
![]() | 4IMW_A_H4BA805_1 (NITRIC OXIDESYNTHASE, BRAIN) | Sapropterin | 4 / 7 | PHE B 305GLU A 14ARG B 298VAL B 157 | 1.70A | 21.10 | None | ||
![]() | 3KO0_A_TFPA201_1 (PROTEIN S100-A4) | Trifluoperazine | 5 / 9 | GLY B 146ILE B 136CYH B 128PHE B 8PHE B 150 | 1.68A | 16.27 | None | ||
![]() | 5DPD_A_SAMA601_0 (PROTEIN LYSINEMETHYLTRANSFERASE 1) | S-Adenosylmethionine | 6 / 12 | TYR A 101LEU A 87GLN A 83VAL A 36VAL A 68VAL A 20 | 1.64A | 18.74 | None | ||
![]() | 3HBB_D_TMQD614_1 (DIHYDROFOLATEREDUCTASE-THYMIDYLATE SYNTHASE) | Trimetrexate | 5 / 10 | VAL B 171ILE B 200ASP B 197ILE B 106ILE B 136 | 1.51A | 19.59 | None | ||
![]() | 6FDY_U_DB8U301_1 (-) | Bosutinib | 5 / 11 | LEU B 271ALA B 267VAL B 261PHE B 219LEU B 205 | 1.47A | 22.46 | None | ||
![]() | 3CS9_B_NILB600_1 (PROTO-ONCOGENETYROSINE-PROTEINKINASE ABL1) | Nilotinib | 5 / 12 | ALA B 129VAL B 157ILE B 152THR B 111ALA B 7 | 1.36A | 20.72 | None | ||
![]() | 1Z9H_A_IMNA379_1 (MEMBRANE-ASSOCIATEDPROSTAGLANDIN ESYNTHASE-2) | Indomethacin | 5 / 12 | PRO B 39PRO B 52VAL B 20ILE B 43LEU B 89 | 1.55A | 22.06 | None | ||
![]() | 4ZDY_A_1YNA602_1 (LANOSTEROL 14-ALPHADEMETHYLASE) | Itraconazole | 5 / 12 | GLY B 23TYR B 54GLY B 174LEU F 4THR B 26 | 1.32A | 19.85 | NoneNoneNone0JU F 5 ( 4.1A)None |