COVID-19 related proteins (SARS-CoV-2)

1) User may click on the UniProt ID (the first column) to get results from sub-structural similarity searches that match all structures mapped to the UniProt ID.
2) User may also click on the last column (View Results) to get results from sub-structural similarity searches that match the query PDB structure i.e. residue patterns in the query structure that are similarly arranged as binding sites for approved drug molecules.

UniProt IDPDBID (Go to PDB)MacromoleculeSource OrganismGo to PubMedView results
-6m2n 3CL protease SARS-CoV-2-View
-6m2q 3CL protease SARS-CoV-2-View
-6m3m nucleocapsid protein SARS-CoV-2-View
-6m71 NSP12 SARS-CoV-2-View
-6w41 CR3022 Fab heavy chain Homo sapiens32245784 View
-6w4h SARS-COV-2 NSP10 SARS-CoV-2-View
-6xez NSP13
NSP8		 SARS-CoV-232676607 View
-6xez NSP13 SARS-CoV-232676607 View
-6xez NSP7
NSP8		 SARS-CoV-232676607 View
-6xez NSP7 SARS-CoV-232676607 View
-6xez NSP8 SARS-CoV-232676607 View
-6xip NSP8 SARS-CoV-2-View
-6zlw 40S RIBOSOMAL PROTEIN S2
NSP1		 SARS-CoV-2
homo sapiens		32680882 View
-6zlw 40S RIBOSOMAL PROTEIN S3
NSP1		 SARS-CoV-2
homo sapiens		32680882 View
-7buy Main protease SARS-CoV-2-View
-7bv2 NSP7 SARS-CoV-232358203 View
-7bv2 NSP8 SARS-CoV-232358203 View
A0A6C0N6C67jtl NONSTRUCTURAL PROTEIN NS8 SARS-CoV-22020 View
P0DTC16lze viral protease SARS-CoV-232321856 View
P0DTC16m03 main protease SARS-CoV-2-View
P0DTC16m0k viral protease SARS-CoV-232321856 View
P0DTC16w9c Papain-like proteinase SARS-CoV-2-View
P0DTC16yhu Replicase polyprotein 1a SARS-CoV-2-View
P0DTC26lvn Spike protein S2 SARS-CoV-2-View
P0DTC26lxt SPIKE PROTEIN S2, SPIKE PROTEIN S2 SARS-CoV-232231345 View
P0DTC26lxt Spike protein S2 SARS-CoV-232231345 View
P0DTC26m1v SPIKE PROTEIN SARS-CoV-2-View
P0DTC26vsb spike glycoprotein SARS-CoV-232075877 View
P0DTC26vxx spike glycoprotein SARS-CoV-232155444 View
P0DTC26vyb Spike glycoprotein SARS-CoV-232155444 View
P0DTC26yla Spike glycoprotein SARS-CoV-2-View
P0DTC26ym0 Spike glycoprotein SARS-CoV-2-View
P0DTC26yor Spike glycoprotein SARS-CoV-2-View
P0DTC27jmp COVA2-39 HEAVY CHAIN
COVA2-39 LIGHT CHAIN
SPIKE PROTEIN S1		 SARS-CoV-2
homo sapiens		32743580 View
P0DTC27jmp COVA2-39 HEAVY CHAIN
SPIKE PROTEIN S1		 SARS-CoV-2
homo sapiens		32743580 View
P0DTC27jmp COVA2-39 LIGHT CHAIN
SPIKE PROTEIN S1		 SARS-CoV-2
homo sapiens		32743580 View
P0DTC27jmp SPIKE PROTEIN S1 SARS-CoV-232743580 View
P0DTC36xdc PROTEIN 3A SARS-CoV-232587976 View
P0DTC76w37 PROTEIN 7A SARS-CoV-2-View
P0DTC76w37 Protein 7a SARS-CoV-2-View
P0DTC96vyo NUCLEOPROTEIN SARS-CoV-2-View
P0DTC96vyo Nucleoprotein SARS-CoV-2-View
P0DTC96wji nucleocapsid protein SARS-CoV-2-View
P0DTC96wkp nucleocapsid protein SARS-CoV-2-View
P0DTC96yi3 Nucleoprotein SARS-CoV-2-View
P0DTC96zco NUCLEOPROTEIN SARS-CoV-2-View
P0DTD15r7y 3C-like proteinase SARS-CoV-2-View
P0DTD15r7z 3C-like proteinase SARS-CoV-2-View
P0DTD15r80 3C-like proteinase SARS-CoV-2-View
P0DTD15r81 3C-like proteinase SARS-CoV-2-View
P0DTD15r82 3C-like proteinase SARS-CoV-2-View
P0DTD15r83 3C-like proteinase SARS-CoV-2-View
P0DTD15r84 3C-like proteinase SARS-CoV-2-View
P0DTD15rfc 3C-like proteinase SARS-CoV-2-View
P0DTD16lu7 main protease SARS-CoV-232272481 View
P0DTD16vww Uridylate-specific endoribonuclease SARS-CoV-232304108 View
P0DTD16vxs NSP3 SARS-CoV-2-View
P0DTD16w01 Uridylate-specific endoribonuclease SARS-CoV-232304108 View
P0DTD16w02 NSP3 SARS-CoV-2-View
P0DTD16w4b NSP9 SARS-CoV-2-View
P0DTD16w4h NSP16 SARS-CoV-2-View
P0DTD16w4h SARS-COV-2 NSP10
SARS-COV-2 NSP16		 SARS-CoV-2-View
P0DTD16w4h SARS-COV-2 NSP16 SARS-CoV-2-View
P0DTD16w61 2'-O-methyltransferase SARS-CoV-2-View
P0DTD16w63 3C-like proteinase SARS-CoV-2-View
P0DTD16w6y NSP3 SARS-CoV-2-View
P0DTD16w75 NSP16 SARS-CoV-2-View
P0DTD16w9q 3C-like proteinase peptide, NSP9 fusion SARS-CoV-2-View
P0DTD16wcf NSP3 SARS-CoV-2-View
P0DTD16wen NSP3 SARS-CoV-2-View
P0DTD16wey NSP3 SARS-CoV-2-View
P0DTD16wey NSP3 SARS-CoV-232578982 View
P0DTD16wiq NSP7 SARS-CoV-2-View
P0DTD16wjt 2'-O-methyltransferase SARS-CoV-2-View
P0DTD16wkq NSP16 SARS-CoV-2-View
P0DTD16wlc URIDYLATE-SPECIFIC ENDORIBONUCLEASE SARS-CoV-2-View
P0DTD16wlc Uridylate-specific endoribonuclease SARS-CoV-2-View
P0DTD16wnp 3C-like proteinase SARS-CoV-2-View
P0DTD16woj Replicase polyprotein 1ab SARS-CoV-2-View
P0DTD16wq3 2'-O-methyltransferase SARS-CoV-2-View
P0DTD16wqd NSP7 SARS-CoV-2-View
P0DTD16wqf 3C-like proteinase SARS-CoV-2-View
P0DTD16wrh NSP3 SARS-CoV-2-View
P0DTD16wrh Peptidase C16 SARS-CoV-2-View
P0DTD16wxd NSP9 SARS-CoV-232592996 View
P0DTD16xez NSP12
NSP13
NSP8		 SARS-CoV-232676607 View
P0DTD16xez NSP12
NSP13		 SARS-CoV-232676607 View
P0DTD16xez NSP12
NSP7		 SARS-CoV-232676607 View
P0DTD16xez NSP12
NSP8		 SARS-CoV-232676607 View
P0DTD16xez NSP12 SARS-CoV-232676607 View
P0DTD16xip NSP7
NSP8		 SARS-CoV-2-View
P0DTD16xip NSP7 SARS-CoV-2-View
P0DTD16y2e Replicase polyprotein 1ab SARS-CoV-232198291 View
P0DTD16y2f Replicase polyprotein 1ab SARS-CoV-232198291 View
P0DTD16y2g Replicase polyprotein 1ab SARS-CoV-232198291 View
P0DTD16y84 Replicase polyprotein 1ab SARS-CoV-2-View
P0DTD16yb7 REPLICASE POLYPROTEIN 1AB SARS-CoV-2-View
P0DTD16yb7 Replicase polyprotein 1ab SARS-CoV-2-View
P0DTD16ynq Replicase polyprotein 1ab SARS-CoV-2-View
P0DTD16yt8 Replicase polyprotein 1ab SARS-CoV-2-View
P0DTD16ywk NSP3 macrodomain SARS-CoV-2-View
P0DTD16ywl NSP3 macrodomain SARS-CoV-2-View
P0DTD16ywm NSP3 macrodomain SARS-CoV-2-View
P0DTD16zsl SARS-COV-2 HELICASE NSP13 SARS-CoV-2-View
P0DTD17bqy main protease SARS-CoV-232272481 View
P0DTD17btf NSP12 SARS-CoV-2-View
P0DTD17bv1 NSP12 SARS-CoV-2-View
P0DTD17bv2 NSP12
NSP7		 SARS-CoV-232358203 View
P0DTD17bv2 NSP12
NSP8		 SARS-CoV-232358203 View
P0DTD17bv2 NSP12 SARS-CoV-2-View
P0DTD17bv2 NSP12 SARS-CoV-232358203 View
P0DTD26z4u PROTEIN 9B SARS-CoV-2-View
Q695T76m17 B(0)AT1 Homo sapiens32132184 View
Q9BYF16lzg ACE2 Homo sapiens32275855 View
Q9BYF16m0j ACE2 Homo sapiens32225176 View