This is a demonstration search for a 6 residue pattern.
The type of residues (3 serines and 3 acidic residues) and the distances between have been set up to include: 1) specific distance values
(3 Angstroms), 2) hydrogen bonding distance (H, which represents 3 Angstroms), and 3) wildcard values (blank distance values).
Clicking submit will take you to the pre-computed results for the search query specified.
aromatic
basic
basic exc HIS
acidic
amide
hydrophobic
medium hydrophobic
Alanine
Arginine
Asparagine
Aspartic acid
Cysteine
Glutamine
Glutamic acid
Glycine
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
aromatic
basic
basic exc HIS
acidic
amide
hydrophobic
medium hydrophobic
Alanine
Arginine
Asparagine
Aspartic acid
Cysteine
Glutamine
Glutamic acid
Glycine
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
aromatic
basic
basic exc HIS
acidic
amide
hydrophobic
medium hydrophobic
Alanine
Arginine
Asparagine
Aspartic acid
Cysteine
Glutamine
Glutamic acid
Glycine
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
aromatic
basic
basic exc HIS
acidic
amide
hydrophobic
medium hydrophobic
Alanine
Arginine
Asparagine
Aspartic acid
Cysteine
Glutamine
Glutamic acid
Glycine
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
aromatic
basic
basic exc HIS
acidic
amide
hydrophobic
medium hydrophobic
Alanine
Arginine
Asparagine
Aspartic acid
Cysteine
Glutamine
Glutamic acid
Glycine
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
aromatic
basic
basic exc HIS
acidic
amide
hydrophobic
medium hydrophobic
Alanine
Arginine
Asparagine
Aspartic acid
Cysteine
Glutamine
Glutamic acid
Glycine
Histidine
Isoleucine
Leucine
Lysine
Methionine
Phenylalanine
Proline
Serine
Threonine
Tryptophan
Tyrosine
Valine
Å
Å
Å
Å
Å
Å
Å
Å
Å
Å
Å
Å
Å
Å
Å