Glaciozyma antarctica protein structure database

Home Browse Download Contact
Protein ID : LAN_17_014
Category : putative
Original description : Putative U4/U6 small nuclear ribonucleoprotein
Sequence : MAEMDIDFDDLVDQNQDYTSAEAHPETARILSELDRKVSARRIAVPTKDLDVRIRLREMREPISLFGERPEDRRD
RLREVISMSRDRDVRMDESDESSDSGIEDEEKEEEFYTEGTMELKKARRDIAEFSIERARKRLARQRLETGLPLG
RLIDVRRAVFAELKSFTNLGSQIGDTRALSSLRFSPDSSMLLTSSWTGTAKLWSVPTCKEIKTIKAHKERIGGVA
WHPQATLSQSRTAANFATSGADNDVKIWGLDGDAPLQTLTGHSSRVCRIAFHPSGKYIGSASYDGTWRLWDAERG
GEELLLQEGHSKEVYAIAFQDDGALVCTGGLDSIGRVWDLRSGKTAMVLDGHVKDILGIDFSPNGHQIATGSNDD
TVRIWDMRSLKSIYTIPAHKSSVSDVKFFHTSSSSLPTGSTPVPRGFAKLPVFADDVRDPVEKDGEKVDMPLTGS
FLVSSGYDGLIKVWSADDWQLIKSMTSDAAGKVMSVDVSPDARFMASAEYSRTYKLWSSPNVDLE
KEGG Ontology ID : K12662
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
Pfam PF08799 pre-mRNA processing factor 4 (PRP4) like 52-79 N/A
Pfam PF00400 WD domain, G-beta repeat 346-381 GO:0005515
PRINTS PR00320 G protein beta WD-40 repeat signature 452-466 N/A
SMART SM00320 WD40_4 165-204 GO:0005515
SMART SM00320 WD40_4 207-254 GO:0005515
SMART SM00320 WD40_4 257-296 GO:0005515
SMART SM00320 WD40_4 300-339 GO:0005515
SMART SM00320 WD40_4 468-508 GO:0005515
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_17_014,2.130.10.10-FF-000443,439-510 ColabFold 82.62 2.368 U4/U6 small nuclear ribonucleoprotein Prp4 LAN_17_014,2.130.10.10-FF-000443,439-510
LAN_17_014,PF00400,308-339 ColabFold 76.61 1.466 WD domain, G-beta repeat LAN_17_014,PF00400,308-339
LAN_17_014,PF00400,209-253 ColabFold 89.84 1.868 WD domain, G-beta repeat LAN_17_014,PF00400,209-253
LAN_17_014,PF00400,260-296 ColabFold 93.84 1.752 WD domain, G-beta repeat LAN_17_014,PF00400,260-296
LAN_17_014,PF00400,346-381 FunMod -0.02187 3.466 WD domain, G-beta repeat LAN_17_014,PF00400,346-381
LAN_17_014,PF08799,52-79 ColabFold 85.58 1.644 pre-mRNA processing factor 4 (PRP4) like LAN_17_014,PF08799,52-79
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_17_014,PF00400,308-339 2,4,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,22,23,24,26,27,28,29,30,31
LAN_17_014,PF00400,209-253 1,2,3,4,5,6,7,10,11,12,13,14,15,16,17,18,19,23,28,31,32,33,34,36,37,42,44,45
LAN_17_014,PF00400,260-296 1,2,3,4,5,7,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,27,29,30,31,32,33,34,35,36

Footer