Glaciozyma antarctica protein structure database

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Protein ID : LAN_16_345
Category : putative
Original description : Putative DNA-directed RNA polymerase I subunit
Sequence : MPGVSHSPSPPPVAGPSKPTSTSFNTLDREHAFAHPSSEGPKYPAPQALVAPHIDSFDALFEGAPIGPNGEVSAS
QGLLDMAIADLQPKVVFDGKGGDSTLGNRLEIKIDNLLIGRPMVPEKGAGSRERRVYPTESRERLATYASRMTAT
ISWSLNGGPSHSITRDLGHLPMMVKSTRCNLKGLPPSELVLHHEEAEEMGGYFIINGNERLIRFLIVPRRNHVTS
IIRPSFGNRGGAYTPYGVAIRSVRPDQTSQTNTLHYLGNGGATLRFSWRKAEYMVPVVMILKALVGATDKEIFKG
IIQNDFDNTFLTDRVELLLRGFKSYGLYTGTQCLEFLGDKFRVVLQVPDDWTNEAVGQFLIDRIVLVHLTDPRDK
LRLLLFMIRKLYALVGGDCCADNPDSPQHQEILMPGFLYGIIIKEKLDELVSGIRLQLLQDVRRDVAGCDFTDNR
YITKSIQRVNADIGNKLQYFLATGNLVTPSGLDLQQAAGYTIVAEKLNFTRYISHFRSVHRGAFFAELKTTTVRK
LLPEAWGFLCPVHTPDGSPCGLLNHFAHKCRLVHAHLAVDHIPSLLSSLGMTQPLDPSIDGRENVCIQLDGRIIG
WAPLSLAIKMANALRMWKTEGLNDVPLDLEIGLVPISKGGQYPGLYLFASRARMMRDVKYLSNGKKDSVGPFEQV
YLDIACMPDEVEQGVTSHIEFSPTNVLSLLANLTPFSDYNQSPRNMYQCQMSKQTMGTPSTALSHRTDNKLYRLQ
SGQTPIVRPDLHNHYGMDGFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAHGSIYKSVIVDLKTVRGDKGP
GGVPAVHFGLGPDVRDDDDKRKTLDSDGLPFLGTRLKSGDAIAGYFDRTSGRTQIEKYKGDEAAYVEEVRIIGGD
GADAEAAKLHIKLRVPRYPDIGDKFSSRHGQKGVCSQKYPAVDMPFSESGMQPDIIINPHAFPSRMTIGMFVESI
AAKAGAMHGLAQDGTPFCFSEDDTPADYFGEQLRAAGYNYHGNEPMYSGITGKEFAADIYIGVVYYQRLRHMVGD
KWQVRTTGPLDQVTRQPVKGRKRGGGIRFGEMERDALLAHGTSFLLQDRLMNCSDYSTAWVCRTCGSMVSLGYDE
VGMGKEIGFGAEGGQEWAAGPGGEYCRSCRAAEEGKMVGNGKRHGTDFVFESLSKGADMEVVAVPFVFRLLVAEL
ASMGIQVTVGVD
KEGG Ontology ID : K03002
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
FunFam 3.90.1100.10-FF-000008 DNA-directed RNA polymerase subunit beta 42-222 N/A
Pfam PF04565 RNA polymerase Rpb2, domain 3 493-556 GO:0003677, GO:0003899, GO:0006351
Pfam PF06883 RNA polymerase I, Rpa2 specific domain 599-656 GO:0003899, GO:0005634, GO:0006351
Pfam PF04560 RNA polymerase Rpb2, domain 7 1075-1209 GO:0003677, GO:0003899, GO:0006351
Gene3D 3.90.1110.10 RNA polymerase Rpb2, domain 2 225-394 GO:0003677, GO:0003899, GO:0006351
Gene3D 2.40.50.150 G3DSA:2.40.50.150 736-918 GO:0003899
ProSitePatterns PS01166 RNA polymerases beta chain signature. 922-934 GO:0003677, GO:0003899, GO:0006351
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_16_345,PF00562,705-1073 FunMod -0.08171 Putative DNA-directed RNA polymerase I subuni LAN_16_345,PF00562,705-1073
LAN_16_345,PF04560,1075-1209 AlphaFold2 70.85 Putative DNA-directed RNA polymerase I subuni LAN_16_345,PF04560,1075-1209
LAN_16_345,PF04563,49-438 FunMod -1.76359 Putative DNA-directed RNA polymerase I subuni LAN_16_345,PF04563,49-438
LAN_16_345,PF04565,493-556 AlphaFold2 91.24 Putative DNA-directed RNA polymerase I subuni LAN_16_345,PF04565,493-556
LAN_16_345,PF06883,599-656 AlphaFold2 87.42 Putative DNA-directed RNA polymerase I subuni LAN_16_345,PF06883,599-656
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_16_345,PF04560,1075-1209 1,2,3,4,5,6,7,8,9,10,11,12,13,16,18,19,20,21,23,24,25,26,27,28,29,30,31,32,33,116,117,118,120,121
LAN_16_345,PF04565,493-556 222,224,227,241,244,246,284,322,381,385,388,390,391,392,393,394,395,396,397,398
LAN_16_345,PF06883,599-656 2,4,6,7,8,9,10,11,12,13,14,15,16,17,34,38,39,40,41,42,43,44,45,46,47,48,56,59,60,61,62,63,64
LAN_16_345,PF04563,49-438 1,2,3,4,5,6,7,8,12,16,31,32,33,34,36,37,38,41,43,44,45,46,47,48,49,50,51,52,55

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