Glaciozyma antarctica protein structure database

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Protein ID : LAN_15_103
Category : putative
Original description : Putative DNA-directed RNA polymerase III subunit
Sequence : MAPKPRALSKAAQVRAAVTAAAAAAAAAGPAAVAEEEEPVASTSAKPVPLLPPATHLPTEPMDLDQTFEAGDGDT
EMADPVEGPPVVEDGEKHYALPAGILDKGKGKATDGGEMKGLQNVADLQGLGEGMEGMGETVWKGKGLTDPIKTV
ADKWDLLPAFLAVKGLVKQHIDSFNYFVDVDLQAILRANARITSDVDPHFYLEYLDIRVGSPERPDENAINQSIT
PHECRLRDLSYSAPVYVNVKYTRGKQEIVSKGIKIGRLPIMLRSNKCILTGKSNAELAQMTECPLDPGGYFVVKG
TEKVILVQEQLSKNRIIVETDPQEGPRPSLRHLSKTYVLTKHNKIYLKHNSIHEDIPVAVVLRALGVVSAREIVQ
IVCGNDEAYRAAFAINIEELSDIKNKKGESIPVETQQQALDYIGARVKIVRRTGPGGGWATRRPFSEEAMEVLAT
VVLAHVPVEDLNFRPKAIYIAVMVRRVLMAMSDTKSVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNHDLKTNID
KILKKVNRATEFDAIKQFQLHGDGITQGFVRAISTGNWSLKRFKMERAGITHVLSRLSFISALGMMTRISSQFEK
TRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIWNICFLIGVEDINVLDGTEMYAEGN
LVVYLNGNVLGLTRCGPRFVAQFRLLRRNGKISEFVSIYVNIQQQAVHIASDGGRICRPMIIVENGKSRVKEVHM
RLLREKKMTFDSFLHKGLIEYLDVNEENDTYIALYEQEILPLTTHLEIEPFCLLGAVAGLIPYPHHNQSPRNTYQ
CAMGKQAIGAIAYNQLQRIDTLLYLMVYPQTPMCRTRTIELVGYDKLPAGQNATVAVMSFSGYDIEDALILNRAS
LDRGFGRCQVFRKYVTLLKRYPNGLYDRLADPPKENGEVMPRYGILDQDGLAHVGEQVNPGQVYINKQTPSNAND
NGVQTSAMGAGAGTWKNTGMTYRGPIPGYIDKVLITDTDQDNTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIV
PQEDMPFNDQGTCPDIIMNPHGFPSRMTVGKMLECLSGKAGVLKGKFEYGTAFGGSKAEEMSQVLIEAGYSYAGK
DYLTSGITGQALESYVFMGPIYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHGAA
QLLLERLMISSDAFKVDVCQECGFMGYNGWCMRCKSSKRVVKLTIPYACKLLFQELMAMNIAPRLVLEDAV
KEGG Ontology ID : K03021
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
FunFam 3.90.1110.10-FF-000006 DNA-directed RNA polymerase subunit beta 329-489 N/A
FunFam 2.40.270.10-FF-000006 DNA-directed RNA polymerase subunit beta 808-907 N/A
Pfam PF04565 RNA polymerase Rpb2, domain 3 578-641 GO:0003677, GO:0003899, GO:0006351
Pfam PF04567 RNA polymerase Rpb2, domain 5 760-790 GO:0006351
Pfam PF04560 RNA polymerase Rpb2, domain 7 1182-1267 GO:0003677, GO:0003899, GO:0006351
Gene3D 3.90.1100.10 G3DSA:3.90.1100.10 158-316 N/A
Gene3D 3.90.1070.20 G3DSA:3.90.1070.20 644-727 N/A
ProSitePatterns PS01166 RNA polymerases beta chain signature. 1033-1045 GO:0003677, GO:0003899, GO:0006351
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_15_103,PF00562,807-1180 ColabFold 91.93 2.326 RNA polymerase Rpb2, domain 6 LAN_15_103,PF00562,807-1180
LAN_15_103,PF04560,1182-1267 ColabFold 91.05 2.689 RNA polymerase Rpb2, domain 7 LAN_15_103,PF04560,1182-1267
LAN_15_103,PF04561,313-499 FunMod -0.7911 3.073 RNA polymerase Rpb2, domain 2 LAN_15_103,PF04561,313-499
LAN_15_103,PF04563,165-541 ColabFold 86.44 2.213 RNA polymerase beta subunit LAN_15_103,PF04563,165-541
LAN_15_103,PF04565,578-641 ColabFold 87.8 1.908 RNA polymerase Rpb2, domain 3 LAN_15_103,PF04565,578-641
LAN_15_103,PF04566,678-739 ColabFold 93.79 1.914 RNA polymerase Rpb2, domain 4 LAN_15_103,PF04566,678-739
LAN_15_103,PF04567,760-800 ColabFold 87.85 2.077 RNA polymerase Rpb2, domain 5 LAN_15_103,PF04567,760-800
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_15_103,PF00562,807-1180 12,13,14,15,16,17,18,20,76,77,78,79,80,81,82,84,85,86,227,229,237,239,241,263,264,265,267,268,269,270,271,273,365
LAN_15_103,PF04560,1182-1267 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,19,21,23,24,25,26,27,28,29,30,31,44,52,66,70,72,73,74,76,77,79,80,81
LAN_15_103,PF04565,578-641 314,315,316,317,329,331,376,420,434,455,456,457,459,463,464,465,468,469,472,475,476,489
LAN_15_103,PF04566,678-739 2,4,6,7,8,9,11,12,14,15,16,17,18,36,38,39,40,42,43,45,56,57,58,59,60,61,62,63,64
LAN_15_103,PF04567,760-800 4,21,22,25,26,28,31,32,33,34,35,37,46,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62
LAN_15_103,PF04561,313-499 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,22,23,25,26,27,28,29,34,36,37,38,39,40,41

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