Glaciozyma antarctica protein structure database

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Protein ID : LAN_14_213
Category : putative
Original description : Putative RNA polymerase beta' chain family protein
Sequence : MLGHQFSHSSQPVRRPKTIQFGILSPEEIKAISVCKVEYPETYEEGSQRPKPGGLSDPRLGTIDRNFKCATCGEG
MAECPGHFGHIELSRAVFHVGFLTKVKKIVESICVLCGKLKGSPHLDPRLAEAVRFIRDPKKRLAVVHSLVKTKN
VCEMDVVEEEGQVPDGTEVVKGHGGCGHSQPLIRREGLKLFMVYGKGKDEDGNPIQPDRKPLTASMTHTLLRKIP
EADLLILGLNPTEAHPSWMILTVLPVPPPPVRPSIAVDGGAMRGEDDLTYKLAEIIRANMSLRKFEEEGAPAHIV
SEFETLLQWHTATYMDNDLPGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIALDEV
GVPYSIARNLTYPERVTPYNLDYLQALVRNGPNEYPGARYVVRDTGDRIDLRYNKRAETTLGYGWIVERHLKDGD
LVLFNRQPSLHKMSMMAHRVKLMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMQICAVPRQIISPQ
ANKPVMGIVQDTLCGVRKFTLRDCFMDREFIQNILLWVPDWDGIVPPPAILKPKQLWTGKQIFGMCVPKGINLYR
APDPASPNPLEDNGIWIEDGELMYGIVDKKTVGASQGGIIHIIFREKGPDVTRDFFSGVQKVVNYWLLHNGFSIG
IGDTVPDKGTMETITAFIETAKAEVAQIIIASQEDKLEPEPGMSIRESFESKVNKALNTARDSSGRSAEKSLKQD
NNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRVPFGFKFRTLPHFTKDDYSPEARGFVENSYLRGLTPQEFFF
HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVAYDGTVRNSLGDIVQFIYGEDGMDGAFIEEQVVDPIRLSD
ARFEARYRVDVMDPAWDFKRGVVQIGLADANVELQAILDAEYRQLQADRDLLRSFIFPNGDATVFLPVNIRRTIQ
NAQQIFHIDFRKASDLPPAEILTAIDELSNRLVVCRGEDDHLTRQAQDNATLLFRIFLRSNFAVRRVLVLHHLNR
EAFEWVLGEVEAKFNASLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVARNLKTP
SMTTVTASTEIFYDPDPSATVIEDDRDFVEAFFAIPDEDVEQNITRQSPWLLRFELDRAKMLDKKLEMSFVAGKI
AEVFEQDLFVIWSEDNAEKLVIRCRALNEVEKEDGEDADEEDIFLKQLETSMLSTISLRGVEGVERVFMLKHKRN
VIAESGEFDTPVEWVLETDGINLRKVLCVDGVDSSRTTSNSCVEILEVLGIEAARASLLRELRAVIEFDGSRVNY
RHLSMLCDIMTNRGSLMAITRHGINRADTGALMRCSFEETVEILMEAAAIGEIDYCTGVAENVLLGQVAPMGTGA
FELAIDMEMLKDVVVDHRLPVPGMMHVAADGSMTPGAGGMTPYATFEDGRTPAHHYEQGLGHAAFSPIHQPAGDG
MYDPMNSMTPLHGGASPAWGGASPFAGGASPGYSPTSPNQYSPISPGYNPRSPGGAGYGRSPGGLAATSPWVDRM
RGAASPMYSPTSPMINFSPASPSFSPSSPSFSPSSPSFSPSSPSFSPSSPSFSPSSPKFSPSSPSFSPSSPKYSP
TSPSFSPSSPSFSPSSPKYSPTSPQYSPTSPKYSPTSPAYSPTSPQQSVGPTSPAYSPTSPRMSPMSPGQASTPA
TAPKSTHYSSKSSWSR
KEGG Ontology ID : K03006
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
FunFam 3.30.1490.180-FF-000001 DNA-directed RNA polymerase subunit 386-440 N/A
FunFam 2.40.40.20-FF-000018 DNA-directed RNA polymerase subunit 441-517 N/A
FunFam 1.10.274.100-FF-000001 DNA-directed RNA polymerase subunit 525-673 N/A
FunFam 1.10.132.30-FF-000001 DNA-directed RNA polymerase subunit 681-796 N/A
FunFam 1.10.150.390-FF-000001 DNA-directed RNA polymerase subunit 1381-1425 N/A
Pfam PF04990 RNA polymerase Rpb1, domain 7 1127-1259 GO:0003677, GO:0003899, GO:0006351
Gene3D 4.10.860.120 RNA polymerase II, clamp domain 4-121 N/A
Gene3D 6.10.250.2940 G3DSA:6.10.250.2940 797-855 N/A
Gene3D 6.20.50.80 G3DSA:6.20.50.80 856-901 N/A
ProSitePatterns PS00115 Eukaryotic RNA polymerase II heptapeptide repeat. 1676-1682 GO:0003677, GO:0006366
ProSitePatterns PS00115 Eukaryotic RNA polymerase II heptapeptide repeat. 1683-1689 GO:0003677, GO:0006366
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_14_213,PF00623,353-517 AlphaFold2 86.38 Putative RNA polymerase beta' chain family protein LAN_14_213,PF00623,353-517
LAN_14_213,PF04983,520-679 AlphaFold2 90.66 Putative RNA polymerase beta' chain family protein LAN_14_213,PF04983,520-679
LAN_14_213,PF04990,1127-1259 AlphaFold2 86.8 Putative RNA polymerase beta' chain family protein LAN_14_213,PF04990,1127-1259
LAN_14_213,PF04992,883-1067 AlphaFold2 90.77 Putative RNA polymerase beta' chain family protein LAN_14_213,PF04992,883-1067
LAN_14_213,PF04997,17-351 AlphaFold2 90.76 Putative RNA polymerase beta' chain family protein LAN_14_213,PF04997,17-351
LAN_14_213,PF04998,817-1381 FunMod -1.16791 Putative RNA polymerase beta' chain family protein LAN_14_213,PF04998,817-1381
LAN_14_213,PF05000,708-810 AlphaFold2 91.93 Putative RNA polymerase beta' chain family protein LAN_14_213,PF05000,708-810
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_14_213,PF04983,520-679 15,16,17,18,19,20,23,24,27,145,147,148,149,150,151,152,153,154,155,156,157,158,159,160
LAN_14_213,PF04990,1127-1259 9,10,11,12,14,15,20,21,49,109,111,112,113,115,116,118
LAN_14_213,PF04992,883-1067 1,2,3,4,5,6,7,8,10,75,79,81,83,85,87,89,90,146,181,182,183,184,185
LAN_14_213,PF04997,17-351 1,2,3,4,5,6,7,8,240,320,321,322,323,324,325,326,327,328,329,330,331,332,333,334,335
LAN_14_213,PF05000,708-810 1136,1137,1138,1140,1141,1142,1143,1144,1145,1153,1154,1155,1156,1157,1158,1159,1160,1161,1162,1163,1164,1165,1166,1167,1168,1169,1171,1172,1174,1175,1209,1210,1211,1227
LAN_14_213,PF04998,817-1381 21,71,72,73,74,75,76,78,79,80,81,82,83,84,85,87,88,89,90,91,92,93,94,95,96,97,98,101,102,103

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