Glaciozyma antarctica protein structure database

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Protein ID : LAN_13_387
Category : putative
Original description : Putative transcription elongation factor
Sequence : MSTSMLLGDPTAAEEEEEDDMDAEEGEDLRPEAGDSSEEESEGSEEEREFKESGFIDEDDSSSRRSKKKRRKHKG
EEASRKRRKDDDDDAGDLDEDDLALLEENTGMKLTRGDSSHKLKRLRRHRSASAGSDASVQGLHNIFDDDERGAD
AEIDTGMFDADEMAGFIEDDSQSDSSGRHGSSEDEEERQQRRRQKKKKVVKKVVRRSGFGAGFVEGITAEAWSEV
TEVFGNGQDYAFALDDEVEDKEEKGLKDIFEPSEIASRMLTEKDDKIRLLDIPERMQLASAGLPELEPLENGAPA
PFIAEEDLEEAAAWMSSRISPRCTEDFLLKDVRGGDYPVLHDEFLKAVSDAIRFLNVDFLEVPFIWHHRSDFLVH
HDPTADDPSLRNLAFLDQADLWRISALSIKYRALVHRKNDLKALFDQLDVEDDYFEEVMSALESVEEVADASDWL
AMKYAAKLAEIKEMKEVENDEAPKKKRATRESRYENAKRNVVSKLAEAIAVSATQLSQDFVTLNKKHFIEDPGVL
PLALAEEYATGEYASAELALDAAKFILVHEISRDPMLKKEARRFFKDYGVVNVRPTEKGISKIDEMHPFYTFKYL
EEKPIGAFHRSAQFLQILSAEAEGLVKCTVVLPEAASDKLISDLGAMYKSDYSSALAEAWNDVREQIIRAAVNEH
LAPAAEVWARNLLQEEEEEFVGKQATSPSVLAISHGAGDPKRDSVFAVFTDQEGHLREYLKLDTLHPEHHQEEDY
QGPDSKDREALADLLRRRRPQVIVVGGFSPSTKRLMGDVQAVANKVSEGILTGKLDVDDDEWKSDDNLKALARFE
TIFVYDDVARIYQNSKRAATEFPDLPILGKYCVGLARYAQSPLNEYAALGPDLIALTYDPNQKLLSREKATHYLE
RALIEVTNKVGVDINRAARNPYYCFLLPYVSGLGPRKASSVVKKINGPIGGTLTTRQNLVVQEVLSTNVFINAAA
FLRIPQDLLRTDLKRNVDAEDGQPDILDDTRIHPEDYDVARKMAADAMEYDEEDIAGLATPSQAVADVMDDDPRK
LDELSLDDFASELAKILGVPKRLTLYGIRDEMQGPYAETRQNFVLPSFVEVFTMFTGETQSTLDRGLIIPVRVVS
VKRDDSVLVRLDSGVEGTIASEYRTDGDFENVPKPRPGQIFQALVMELKHDTFEVELSTQERAIARGDFEQRRVH
PDPSYYNRQQAEEDKQVQVATAQKKGGRIRRQIKHPNFHNFSAGEAEQFLANQQRGQCVIRPSSKEDHLAVTWKV
DDGVYQHIAVTELDKINSFSIGSRLRIESKHTYTDLDELINIHIKGMAKKVEEMLAHEKYRGSQEELNLYLQNYT
MANPGQSAYGFGIKRDDPKLAGQFVVSFRSNNDVEIQTWPVKVVPGAFSLLGEEHGDVMALCNAFKTAYQTRLAS
GARLPNPTPRHPGLGRTPNPYAGRTPNPYASPAVGRGTPMDGGRGTPMAQFDPRTAPSPYPSHQPVPQSAYGRTP
LYQGGVPQAGPPGAYPPPMPMGAPGQGQYPPGQGWGGQQYPQQQYPQQGWGGQQGYR
KEGG Ontology ID : K11292
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
CDD cd09918 SH2_Nterm_SPT6_like 1234-1315 N/A
CDD cd09928 SH2_Cterm_SPT6_like 1328-1419 N/A
Pfam PF14632 Acidic N-terminal SPT6 35-125 N/A
Pfam PF14641 Helix-turn-helix DNA-binding domain of SPT6 304-428 GO:0003677
Pfam PF14639 Holliday-junction resolvase-like of SPT6 700-874 N/A
Pfam PF14635 Helix-hairpin-helix motif 877-980 N/A
Gene3D 1.10.10.2740 Spt6, Death-like domain 995-1089 N/A
ProSiteProfiles PS50126 S1 domain profile. 1116-1185 GO:0003676
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_13_387,1.10.10.2740-FF-000002,993-1089 FunMod -1.10372 Putative transcription elongation factor LAN_13_387,1.10.10.2740-FF-000002,993-1089
LAN_13_387,PF14632,35-125 AlphaFold2 75.96 Putative transcription elongation factor LAN_13_387,PF14632,35-125
LAN_13_387,PF14633,1205-1417 AlphaFold2 91.03 Putative transcription elongation factor LAN_13_387,PF14633,1205-1417
LAN_13_387,PF14635,877-980 AlphaFold2 94.97 Putative transcription elongation factor LAN_13_387,PF14635,877-980
LAN_13_387,PF14639,700-874 FunMod -0.83868 Putative transcription elongation factor LAN_13_387,PF14639,700-874
LAN_13_387,PF14641,304-428 FunMod -0.44518 Putative transcription elongation factor LAN_13_387,PF14641,304-428
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_13_387,1.10.10.2740-FF-000002,993-1089 1001,1003,1004,1006,1008,1048,1054,1056,1058,1073,1074,1076,1077,1079,1080,1082,1083,1084,1085,1086,1087,1088
LAN_13_387,PF14632,35-125 46,49,53,56,67,73,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91
LAN_13_387,PF14633,1205-1417 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,18,87,88,89,90,91

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