Glaciozyma antarctica protein structure database

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Protein ID : LAN_12_353
Category : putative
Original description : Putative 5'-3' exoribonuclease 
Sequence : MPSDRQFFRFMSERYPLISQLIQENHIPEFDALYLDMNGIIHNCSHPNDNDASFRITEEAIFLAVFAYISHLFSV
IKPQKLFFLAVDGVAPRAKMNQQRSRRFRTAREMKELVDKARRKGEDIPEGDGFDSNCITPGTPFMARLSEQLKY
FIAKKVSEDADWRGVEIVLSGHEVPGEGEHKIMEYIRLKKAQPGYDANVRHCLYGLDADLIMLGLLSHDPHFCLL
REEVTFGPKRGKPKGLETQNFFLMHLSLFREYLDLEFSSLKTSIPALPFEYDLERIIDDFILLNIFVGNDFLPHL
PGLHINEGALGRLFEIYKRILPAAGGYLNEHGILNVKRLQLVLNELTVFETEHFEHEFADSNWFKGKQMKHVDAM
EKARARGKLVLTKEQRRLFFLVKAFVLDNLATLSPNARLEFPATLPARDRRILVDIADELHLSVTYDEFDAAGRN
LIVLSFEEEMMELAREEGEGEDAEWKDAINRVIRKYEKAEVAKDFDEEEWEDSHAKVLEEKMTAWKKEYYKEKLE
FDYSDSVSLHNLAYRYIEGLQWVLHYYYSGVASWGWFYNYHYAPKISDLKYAEDYTFNFDLGTPFHPFEQLMGVL
PDLSSSHIPLAFRDLLSDPTSPIIDFYPVDFEQDLNGKKQDWEAIVKIPFIDVKRLLSTMAAREPRLSPEERARN
QFGDSWRFTYDDTESVYPSSLPGFFPDLIHCRCKLEKFHLPTLQGGLSYVKGLVPGVLLGADAVSGFPSLHTIPY
TGHLGFHGVSVFQGDSRKETMVITIENRYEGLKSEDIAKLLVGHKTFTGYPYLQEGRVVAVSDELFRYVVDGQGR
VRSEAHAPANVMGWKRTADRLEHVYSKRYGCIIGNIEVVVHVQLLKGLKRLDDGATIKEYEEREQEFAAQATVRS
VANEDVRYMEQPPIPVEMEYPEGCKVFFLGGAAYGVPAQVVGHEGDNLAIRIAFFPNDKLENTAFQNRLATVAQA
TYVPSHAVTRQVRMSGLTLSKLTSSLMVSEGERKTNIGLNLKFEAKSQKVLGYSRKGVSGWEFSQKAIELIQDYN
RKFPEVADALDRKRGDLTRATDFFDPAVADSRLKELKAWLVEKGVRDFDKVPLYSDQLDKDTVMSLEKLADSIVA
GKNVARMKQAAIKGIPRQALLKPGHAANRLREQRFTLGDRVIMVADAGSVPLSAKGVVVGILSGFIDVVFDVQFI
GGTTLGDRCSPHRGQTVSPITILNLSDQQFASGTKPPAPAAAPAARGGRGAPVPHFTRGPAGGPAILPARGLPAG
GFHPAPQTANGRGRDAFPNAGIQVLQNPTRQINGNHGVARSQAPHQIQSTTPSTFTHQQNLGAALGIPIGPAAGV
PRGGARGGRGFYPPSFPRGGGVVHPVYTAAQRGAPGAIRGAVQVGRGVAVPPPPQLVNGSRGRGGMAIYAHVATA
LLQARPASWLPSRHSDHPVLLEPPTSPQRDSARSARSLSPAPPSSRPKLPEKGNDLMVDYKGKLHKVKIQTLKLG
GSSDDTITIARVKCPVPKGVPGHIIKRFDTDAVSASSLFRAAYPLASDAEEAAEMAWISKGSRGRYGDTKKAGAE
HDDSRKLSGTWIPATSAASLAKEYKITRFATELIEYAPTPAIESMEISPASTRSPRTKRQRVASPPAGTPSKVAP
SALSGASSAGVSILQTLSTDVETGIITETTEVKVDVPVVTPLPSTNGLIATDEEVAAQIEAAQKLVESLKESGTL
AELAETTVIEGSKKRALEEEEEEEEALPESGPLADVLVDRRGFFGKIFKRAPKARKVPTNAGREIKVPGSQIALM
EQRGVAPEGRRWMAGVGLAVAVGATAAAPYLFG
KEGG Ontology ID : K12618
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
Pfam PF18194 Exoribonuclease 1 Domain-3 1079-1151 N/A
Pfam PF18129 Xrn1 SH3-like domain 1158-1224 N/A
Gene3D 3.40.50.12390 G3DSA:3.40.50.12390 5-126 N/A
Gene3D 3.40.50.12390 G3DSA:3.40.50.12390 128-299 N/A
Gene3D 2.170.260.40 G3DSA:2.170.260.40 745-911 N/A
Gene3D 2.30.30.30 G3DSA:2.30.30.30 912-962 N/A
Gene3D 1.25.40.1050 G3DSA:1.25.40.1050 569-677 N/A
SUPERFAMILY SSF54616 DNA-binding domain of Mlu1-box binding protein MBP1 1523-1618 GO:0003677
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_12_353,PF03159,6-228 AlphaFold2 91.54 Putative 5'-3' exoribonuclease LAN_12_353,PF03159,6-228
LAN_12_353,PF17846,276-680 AlphaFold2 87.12 Putative 5'-3' exoribonuclease LAN_12_353,PF17846,276-680
LAN_12_353,PF18129,1158-1224 FunMod -0.74894 Putative 5'-3' exoribonuclease LAN_12_353,PF18129,1158-1224
LAN_12_353,PF18332,727-911 AlphaFold2 94.8 Putative 5'-3' exoribonuclease LAN_12_353,PF18332,727-911
LAN_12_353,PF18334,915-1000 AlphaFold2 87.58 Putative 5'-3' exoribonuclease LAN_12_353,PF18334,915-1000
Ligand binding site information :
Structure ID Residues
LAN_12_353,PF03159,6-228 100,101,104,108,123,124,125,126,127,129,131,33,34,37,41,43,44,46,47,49,82,89,93,96,97
LAN_12_353,PF17846,276-680 23,24,240,244,247,248,26,27,29,291,292,293,295,361,362,363,368,370,78,82
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_12_353,PF03159,6-228 1,2,3,4,5,6,7,8,9,10,11,12,13,201,202,203,204,206,207,208,209,210,211,217,218,219,221
LAN_12_353,PF17846,276-680 1,2,3,4,5,6,7,8,10,11,14,18,19,20,21,23,39,46,52,55,56,58,275,276,277,278,279,280,281,282
LAN_12_353,PF18332,727-911 28,29,30,34,35,36,37,38,39,40,41,42,43,44,45,122,123,126,127,128
LAN_12_353,PF18334,915-1000 13,14,15,16,17,18,19,20,21,22,23,34,36,37,38,39,40,41,42,44,45

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