Glaciozyma antarctica protein structure database

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Protein ID : LAN_11_067
Category : putative
Original description : Putative RNA polymerase
Sequence : MNTSLITHCWAVIASYFTDKTLVSQQIDSFNEFVNNTMQELVDEGQSLILDQNMQHTGRAGDVTKRYELHFGQIY
LSKPTMTEADGTVSPMFPNEARLRNLTYSAPLYIDMKKRVMVQDSDEADPETGELAWTEEKEDGDDGEDEKVYIG
KVPIMLRSHFCILDGLEEKDVLELNECPYDKGGYFVINGSEKVLIAQERMAANRVYVFAKTQPSPITFLAEIRSA
VEKGGKTISSMQIKMMGRNERQSGQTIKTSLPYIRNDIPIVVVFRALDIIPDKDILDHICYDRNDTELFEMLKPC
LEDAFPIQNRDVALDFIGRRGTIAALTRERRINYAQEILQKEMLPHVSMAQGQNTKKAYFFGYMVHRLLLAALER
RELDDRDHFGAKRLDLAGPLLAALFRMLFRKLTKDVYRHLQKCVETQKPFNLNTAVKSNTITNGLKYSLATGNWG
DQKKAMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALM
AYISVGSPSAPIVEFLEEWGMENLEEFSSEMSKGTKVFVNGVWQGVHRDPAQLVETIKRLRRCGDISYEVSVVRD
VREKELRLFTDAGRVCRPLFIVQDQRLVLTKDDVAALQVEPNEEAGVVKMKWSDLVEHGVIEYLDAEEEETVMIC
MTPEDLETSRIYQETGQVQADTFDPSATVKGTMGMNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM
GKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLHFRELPAGQNAIVAILCYSGYNQEDSVILNQSSIDR
GLFRSLYYRSYMDQEKKSGALTMEEFEKPTRDSTLRLKHGTYEKLEADGLVGLGERVAGEDIIIGKTAPIPPDSE
ELGQRTKSHTKRDVSTPLKSTENGIVDSVLVTTNSEGLKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQED
MPFTSEGTTPDIIINPHAIPSRMTIGHLVECLLSKVSTISGNEGDATPFSEVTVEAISNLLKDYGYHSRGLEIMY
NGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLK
ERMFEASDGYRLHVCDICGLTAIANLKKQSFECRSCKNKTEISQVLLPYAAKLLFQELQSMGIATRFGFESDMEN
ERWGWQAPYAVARTKELDILSADFLYFVRPQLKGTGLLQQLQFPSGHRGRSVSPRSSPTRPPRAMPRNRPRKRKS
KPPSARPPPSRPAAPSRSTSTTSDSSSDAEGISLHDYAGDLRVWNADWEEKLEVMYGSSAEPFITEATQYRFMSF
VAPENDELGEEAKRNVLGRARELYRLVKNDFRGRYGMVWRELREVEREEIVLAALAEAHRATRGNARACETIMRG
IAPEITLERMAGRGGKGFLKLLGALLPIGEDASTYSVVRNSELERLIGIRVDDHSPDIPRSRISRAYQEDQLLVR
HSSLLNFDGIFEPSAVRAETAITPSDSSANSSPKKLPPNSRTCQLPHCAVSQSVKAPVLGVLEDCQRQHWPSHKL
ICAKYHQPPPAPPLLNTSAAFPESFLNFALLQQTIHLARDEVPATCAWVIFPSREEEAIVRYLGDSRLAGEDLAH
ILETRRKAIETKDMAAIGELVFFILLLVRGIGGQVFGGSAVKLDEEMIKQQLSREFELPVAELEKAATRAEDGLP
RWLQKMELLVMEDLQDTAHKLHLIIQGRNAEAFSFSHQSTTGPPGATSD
KEGG Ontology ID : K03010
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
FunFam 3.90.1100.10-FF-000003 DNA-directed RNA polymerase subunit beta 14-209 N/A
FunFam 3.90.1110.10-FF-000003 DNA-directed RNA polymerase subunit beta 210-380 N/A
FunFam 2.40.270.10-FF-000006 DNA-directed RNA polymerase subunit beta 730-824 N/A
FunFam 2.40.50.150-FF-000002 DNA-directed RNA polymerase subunit beta 825-950 N/A
Pfam PF04565 RNA polymerase Rpb2, domain 3 464-528 GO:0003677, GO:0003899, GO:0006351
Pfam PF04567 RNA polymerase Rpb2, domain 5 652-722 GO:0006351
Pfam PF04560 RNA polymerase Rpb2, domain 7 1103-1192 GO:0003677, GO:0003899, GO:0006351
Gene3D 3.90.1070.20 G3DSA:3.90.1070.20 531-611 N/A
ProSitePatterns PS01166 RNA polymerases beta chain signature. 954-966 GO:0003677, GO:0003899, GO:0006351
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_11_067,PF00562,729-1101 FunMod -0.04098 Putative RNA polymerase LAN_11_067,PF00562,729-1101
LAN_11_067,PF04560,1103-1192 AlphaFold2 87 Putative RNA polymerase LAN_11_067,PF04560,1103-1192
LAN_11_067,PF04563,22-438 FunMod -1.67692 Putative RNA polymerase LAN_11_067,PF04563,22-438
LAN_11_067,PF04565,464-528 AlphaFold2 86.37 Putative RNA polymerase LAN_11_067,PF04565,464-528
LAN_11_067,PF04566,562-623 FunMod -1.13872 Putative RNA polymerase LAN_11_067,PF04566,562-623
LAN_11_067,PF04567,652-722 AlphaFold2 82.98 Putative RNA polymerase LAN_11_067,PF04567,652-722
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_11_067,PF04560,1103-1192 732,736,738,740,741,742,743,744,745,746,757,758,759,760,761,762,772,775,776,790,792,793,794,795,804,805,806,807,808,809,810,812,813,814,815,964,968,969,991,992,994,995,996,997,998,1000,1003
LAN_11_067,PF04565,464-528 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,24,25,26,28,29,30,71
LAN_11_067,PF04567,652-722 203,204,206,221,282,285,286,346,347,360,363,366,367,370,379
LAN_11_067,PF00562,729-1101 12,13,14,15,16,17,18,34,35,37,38,39,40,41,42,43,44,45,46,57,59,60,61,62,63,64,65
LAN_11_067,PF04563,22-438 562,563,564,565,566,567,568,569,570,582,586,589,590,591,592,593,594,595,596,597,598,607,608,609,610,611
LAN_11_067,PF04566,562-623 1,2,3,4,5,8,9,10,11,12,13,14,15,16,17,18,20,21,22,23,25,26,27,29,30,57,64,65,66,67,68,69,70,71

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