Glaciozyma antarctica protein structure database

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Protein ID : LAN_11_054
Category : putative
Original description : Putative rRNA biogenesis protein 
Sequence : MPAPDRGGKTRTTSAHGPTAAKKPFKAPAAGSKPFPSKPRPSGAAPPTATSSSTPTGSWGTKRKADGEEKVEEPE
KRVVANSLLNAPEEIDFPRGGGTNLTQVEVYEAQLEGDKEARDEEVALVSNTEVVKDKSKSKRRKLERELAGAAI
KEKNALPKDAFRVEHLNYKRLIPSTKVFAQIILVRPLELIVSLPNQLLGHIPITNISPEYTARLEASGEATSSED
SEDSEDESDIGSQKAIKGLPGLATLFKEGQWVSAVVVASKGTDSKAKLGGREGDENVRASRRVELSLEPEKVNEG
SAKGDLKAGFTLSASVNSVEDHGYILSLGLPSLTSFLPFKEAKKLQPTRLEIGQLVSCRVKDVSENGRTCTVTVG
RAEVIGSTLSAATSITSILPSHLVTALVTATLSSGLNVKFFGYFDGTIDLFHLNGQNPETDFKVGQKIKARVLWD
SVGSTPKKFSLSLAPQVLAMSVAKVGEIDALVDRFPVGRMLEQVKVVRMDDEWGLTCEIVEGEDKVAAFVHISRI
TDDHLASIPKSGPWKVGTVHRARVIGYSAVDGLVQLSLQPTVLEQAFLRVSDVQVGEIIKGTIKRLTDSALFVSI
SGNVDGVVWPIHYADIKLKHPEKKFKAGASIKARARSSPALIFSADPIKNRVVLTLKRQLINSELPIVATFAEAQ
VGVVTHGTVSKVMEKGVLVDFFGGIRALIPAGEAAEGFTADLSRVFTVGKVIPVRIIAADVETGRIVASARQALD
TFNKPSDTATVDIGTVTSGDIAALHEANIVITLQPSRTKALMSYSTLARHRKTTIDALRADLAKGQTLEDLVVVS
KNADKGFVIVGLVPSKAKKVDDAEQPVGNVTLDSLVVGQVVAGRICGKVPTGILVQLSRTVRGRVQRTEVADDYD
VSDAIAIGSQVQCVVLEVDAEHSRVDLSLRPSRLDKDVVAKDVAVSAVEELKPGQPIRGFVKNIANHGLFVSLGG
NITARVLIKELFDEFVKEWKPRFAVGQLVEGKITSVDKLQNLVELRLRKNAAVKEASIEYSDLAKGQVIKGVVKR
VEAYGAFIRIDGSNISGLCHKSKVTDDEGTAWTEFVHENDKVKAVILDIDAEKKKISLGLKASLFPEGASDEQGD
SEDGDEEEGDEEEDEDEDEDVEVDSDEGEDIEFDDGESAEDSDAEMDASEIEIPVASTSKLPAVKPKKVAPLAVA
AGFNWDGEDAGEEAPQADENSKSDEEVVAEPESKKRGKDVLEDRTGASQAPTSLADFERLLLGSPNSSYIWIQFV
AYYLGLSQVDKAREIGRRALKTINFREEQEKLNVWVALLNLENTYGTEALLAELFIEAAQSNDAKTVYLRLVDIY
ERTGKFERLVKKFGQSSKAWTLFGQFYLTRGRATEARDLLPRSLKSLEKRKHVKTIAKFAQLEFKLGDAERGRTI
FEGIMDSYPKRLDLWFVYVDMEIKQNNVAGVRALFDRILVQRLSSKKGKSVFRKWLSFEKEHGDEAGVDACKTKA
LAFVESLA
KEGG Ontology ID : K14792
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
CDD cd05693 S1_Rrp5_repeat_hs1_sc1 171-298 N/A
CDD cd05697 S1_Rrp5_repeat_hs5 581-656 N/A
CDD cd05707 S1_Rrp5_repeat_sc11 954-1020 N/A
FunFam 2.40.50.140-FF-000148 protein RRP5 homolog isoform X1 306-375 N/A
Pfam PF00575 S1 RNA binding domain 675-745 GO:0003676
Pfam PF00575 S1 RNA binding domain 1039-1111 GO:0003676
Gene3D 2.40.50.140 Nucleic acid-binding proteins 493-567 N/A
SMART SM00316 S1_6 861-930 N/A
SMART SM00386 hat_new_1 1282-1319 GO:0006396
SMART SM00386 hat_new_1 1381-1415 GO:0006396
SMART SM00386 hat_new_1 1417-1449 GO:0006396
SMART SM00386 hat_new_1 1451-1486 GO:0006396
SUPERFAMILY SSF50249 Nucleic acid-binding proteins 386-466 N/A
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_11_054,2.40.50.140-FF-000103,1029-1114 ColabFold 71.9 3.349 protein RRP5 homolog LAN_11_054,2.40.50.140-FF-000103,1029-1114
LAN_11_054,2.40.50.140-FF-000103,569-660 ColabFold 74.5 3.422 protein RRP5 homolog LAN_11_054,2.40.50.140-FF-000103,569-660
LAN_11_054,2.40.50.140-FF-000148,306-375 ColabFold 89.4 2.004 protein RRP5 homolog isoform X1 LAN_11_054,2.40.50.140-FF-000148,306-375
LAN_11_054,2.40.50.140-FF-000155,938-1027 ColabFold 82.1 2.575 rRNA biogenesis protein RRP5 LAN_11_054,2.40.50.140-FF-000155,938-1027
LAN_11_054,PF00575,675-745 FunMod -0.39242 2.37 S1 RNA binding domain LAN_11_054,PF00575,675-745
LAN_11_054,PF00575,862-930 FunMod -1.05315 2.691 S1 RNA binding domain LAN_11_054,PF00575,862-930
LAN_11_054,PF05843,1408-1494 FunMod -1.91389 2.49 Suppressor of forked protein (Suf) LAN_11_054,PF05843,1408-1494
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_11_054,2.40.50.140-FF-000103,1029-1114 21,22,23,24,25,26,29,38,40,42,43,44,45,52,53,55,56,57,59,60,61,62,82
LAN_11_054,2.40.50.140-FF-000103,569-660 7,8,12,41,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,85
LAN_11_054,2.40.50.140-FF-000155,938-1027 23,26,27,28,29,30,33,41,43,45,46,50,53,54,55,56,58,59,60,61,62,63,64,65,84
LAN_11_054,PF00575,675-745 675,676,677,678,679,680,681,697,698,699,700,703,730,732,733,734,735,736,737,738,739,740,741,742,744,745

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