Glaciozyma antarctica protein structure database

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Protein ID : LAN_05_162
Category : putative
Original description : Putative DNA ligase
Sequence : MPPKSYVEPPPTQGDLSKFLGKQQPPRQQTLGAMLKKADPAANDGDEMQVDDAEAEVVVLSGGEDEDEEAVQAVR
PKKRRTVAVSSDEDEEAAPKASSSAKKPKKDSTPAAEPVIKKAPTPSLSKERFTAPSPKAKAAPVADQKPPVSSF
FAPKPKPQPKEVPAASSSGKAKMAEKGKGKAESVEPEKKQEPAEEAEDSESNEEDDEAAGQLADIFTRKATPAKG
AKDRVDWKAGAPVPYQALTDTFDLISQTTKRLEISAFLTQFLVEVIQKTPDDLLKVVYLCINSLCPAYESLKLGV
AEAFLMKAIGLSTGRKPADIKADYKKAGDLGSVAQTSRNKQQTLFQPKQLTISSVFMTLRDIAKVSGDAAQSRKV
GLINKLLAACGGSETRFLIRSLEGKLRIGLAEKTVLVSLAHAAVTAAALKEGKKLSKERMKGELEEGAEIVKAVF
SELPSYDVVIPVLLEKGVHKLKESCFLTPGVPLKPMLAKPTKAITEVLDRFEGKKFTCEYKYDGERAQVHFLEDG
SIKVFSRNSEDMSVKYPDLVEQLPRCIKEGVKSFVIDCEAVAWEPDDKRLLPFQDLSRRKRKDVKAEDIKVKVHL
FAFDLLYLNGKPLLEENLERRRELLHETLQPVEGEFAFAMSEDATSVEAIQIFLDKSIKDGCEGLMVKMLEGEGA
SYEPSRRSVNWLKLKKDYLAGVGDSFDLVVIGADHGKGKRLNVYGAFHLACKDHDGEGYQAICKIGTGFSDEDLK
SHFEALQPHLRDPNIKPSDYEVPSGGSYSPPDVWFEPKVVWEVLAADLSLSPIYTAGIGLCDDGRGISLRFPRFL
RVRDDKAPEDATDGEFVADAYRRQATTAPKGKGKKDDDEGGFW
KEGG Ontology ID : K10747
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
Pfam PF04675 DNA ligase N terminus 239-415 GO:0003677, GO:0003910, GO:0006281, GO:0006310
Pfam PF04679 ATP dependent DNA ligase C terminal region 718-831 GO:0003910, GO:0006281, GO:0006310
Gene3D 3.30.470.30 DNA ligase/mRNA capping enzyme 517-639 N/A
ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 509-516 GO:0003909
ProSitePatterns PS00333 ATP-dependent DNA ligase signature 2. 663-690 GO:0003909
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_05_162,1.10.3260.10-FF-000001,217-487 AlphaFold2 90.04 Putative DNA ligase LAN_05_162,1.10.3260.10-FF-000001,217-487
LAN_05_162,2.40.50.140-FF-000062,695-859 FunMod -1.66674 Putative DNA ligase LAN_05_162,2.40.50.140-FF-000062,695-859
LAN_05_162,3.30.470.30-FF-000016,485-692 AlphaFold2 94.51 Putative DNA ligase LAN_05_162,3.30.470.30-FF-000016,485-692
Ligand binding site information :
Structure ID Residues
LAN_05_162,3.30.470.30-FF-000016,485-692 119,155,179,182,2,204,206,26,27,28,3,30,32,4,48,80
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_05_162,1.10.3260.10-FF-000001,217-487 76,77,79,125,127,128,129,130,131,132,164,167,168,170,231,232,235,236,242,260,261,262,263,264,265,266,267,268,269,270,271
LAN_05_162,3.30.470.30-FF-000016,485-692 709,710,712,720,721,739,741,778,779,780,782,783,820,821,822
LAN_05_162,2.40.50.140-FF-000062,695-859 1,3,4,5,31,32,34,46,47,48,49,50,80,182,194,195,196,197,198

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