Glaciozyma antarctica protein structure database

Home Browse Download Contact
Protein ID : LAN_04_384
Category : putative
Original description : Putative DEAD box helicase family protein 
Sequence : MSERDSKRARTTADPSDNPYLAHLSSTGTSTGYGTASGGAGAGPTEGWIPRKINGAQVGKAMDGPVNPFNGRPHS
QRYFDILKLRKGLPVHAQMAEFLEMFSKNQFVVMVGETGSGKTTQIPQYVAFADLPHTRRPQLQVACTQPRRVAA
MSVAKRVADEMDVTLGDEVGYSIRFEDCTSPKTFLKYMTDGMLLREAMNDHMLSRYSTVILDEAHERTLATDILM
GLLKDIAKRRPDLKIVVMSATLDAAKFQNYFFGAPLLKVPGRTFAVEVFYTPEPEPDYLEAAIRTVLMIHQAEPE
GDILVFLTGEEEIEDACRKISGEADGLPHSIGPLRAVPLYSSLPPQQQQRIFDKAPAPRTPGGPPGRKVVISTNI
AETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTESDFVKELEEQT
YPEILRCNLASVILELKKLGIDDLVHFDYMDPPAPETVMRALELLNYLAAFDDEGIRLADGISLLIGDIMSAFPL
EPQLAKMLIVSPEFKCSNEILSIAAMLSVPNPYLRPNSQRKEADEAKAQFAHPHGDHLSLLNLYHAYRGSPDSQW
CWANYVSFRAMQQADNVRNQLKRSMEKLDLDLVSTSFEDKSYYENIRKALTCGFFMHVAHREGDKNSYQTVKDHQ
VVGLHPSTGLDNNPEWVLYNEFVLTTRNFIRTCTEVRPEWLLEFAADYYDVKTFPAGEAKRSLERVTMKKQGKVS
ASGEDGREKKKRKKDRK
KEGG Ontology ID : K12820
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
Pfam PF00271 Helicase conserved C-terminal domain 292-428 N/A
Pfam PF04408 Helicase associated domain (HA2) 491-585 GO:0004386
Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 646-721 N/A
ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 207-216 N/A
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_04_384,1.20.120.1080-FF-000003,474-588 ColabFold 91.79 2.038 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 LAN_04_384,1.20.120.1080-FF-000003,474-588
LAN_04_384,3.40.50.300-FF-000007,268-450 ColabFold 95.25 1.774 Pre-mRNA-splicing factor ATP-dependent RNA helicase LAN_04_384,3.40.50.300-FF-000007,268-450
LAN_04_384,3.40.50.300-FF-001148,45-267 ColabFold 95.04 2.051 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 LAN_04_384,3.40.50.300-FF-001148,45-267
LAN_04_384,PF07717,646-721 FunMod -1.46145 2.374 Oligonucleotide/oligosaccharide-binding (OB)-fold LAN_04_384,PF07717,646-721
Ligand binding site information : N/A
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_04_384,1.20.120.1080-FF-000003,474-588 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,22,23,25,26,28,44
LAN_04_384,3.40.50.300-FF-000007,268-450 1,2,81,85,107,108,110,111,112,113,114,116,117,131,132,134,138,141,152,153,156,157,160,161
LAN_04_384,3.40.50.300-FF-001148,45-267 101,102,103,104,105,107,108,109,130,131,132,133,134,145,147,148,150,151,152,154,155,175,176,179
LAN_04_384,PF07717,646-721 646,647,648,649,650,652,653,654,655,656,657,695,707,709,712,714,716,717,718,719,720

Footer