Glaciozyma antarctica protein structure database

Home Browse Download Contact
Protein ID : LAN_03_080
Category : putative
Original description : Putative MPN (JAB/Mov34) domain-containing protein
Sequence : MSAPPPGFSGPPPGFDGFTAQPSFQEPPPMSQEQLDAKARKWNSLQSKRFGSARKTGYVDTGKQPLPVEHVRKIL
KDHGDMSNRKFRTDKRVHLGALKYVPHAVMKLLENMPMPWEQVREVSVIYHVTGAITFVSEIPTVIPPVYHAQWA
TMWLAMRREKRDRRHFKRMRFPPFDDEEPPLDYGDNVLDTEPLEAIQLELDDQEDSPIIDWFYDAKPLVGTPHVN
GSSYKVWNLDLPQMANLYRFGRTLLSDFADRNYFYLFEPKAFFTAKALNVAIPGGPRFEPLYRDTDNYDDDWNEF
NDVNKVVIRQQIRTEYKVAFPHLYNSLPRSVHIPVYHTPHTLYIRTEDPDLPAFYFDPIIHPISSRGVAPKNELV
SHESLVFGDDGDEDDFELPAAVEPFLEECEIETDRTADAIALWWAPHPYNQRSGRTVRAQDMPLVQNWYLEHCPP
GQPVKVRVSYQKLLKCYVLNQLRSRPAKAQVKKNLFRQLKATKFFQTTRMDWVEAGLQVCRQGYNMLNLLIHRKN
LNYLHLDYNMNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDSHVQYRLGNVDAFQLADGLQFTFAHVGQ
LTGMYRYKYKLMRQVRMCKDLKHVIYTRFNSGPVGKGPGVGFWAPGWRVWLFFLRGIVPLLERWLGNLLARQFEG
RNSKGIAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKSKTILQHLSEAWRCWKANIPWKVPGMPTAIEN
IILRFVKAKSDWWTSVAHYNRERIRRGATVDKTVSKKNLGRLTRLYLKAEQERQNSYLKDGPYVSSEEAVAIYSA
TVHWLESRKFAPIPFPPLSYKHDTKLLVLALEKLKEAYSVKGRLNQSQREELALVEQAYDNPHETLSRIKRLLLT
QRAFKEAGIEFFDTYEKLIPCYDIEPMEKITDAYLDQFLYFEADKRGLFPSWIKPADTEPPPLLVYKWAQGINNL
HDVWETSEGECNVLMETQLSKVYEKIDLTLLNRLLRLIMDHNLADYCTSKNNIVLTYKDMSHVNAYGMIRGLQFS
SFIFQYYGLVLDILILGLQRASEMAGPPQIPNNFLQFRDTATETRHPIRLYSRYIDRIHIMFRFTADESRDLIQR
YLSANPDPNNENLIGYNNKKCWPRDCRMRLIKHDVNLGRAVFWDVKNRLPRSLTTIDWDDTFVSVYSKDNPQLLF
SMSNFELRILPKIRNVNEQFTLKDGVWNLTNEQTKERTAQAFLRVSDKGIEQFHNRIRQVLMSSGSTTFSKIINK
WNTAIIGLMCYYREAVLHTEQMLDARRQVGEQDSDARQGASLSLIGLNSKMPSRFPPAVFYTPKELGGLGMLSMG
HILIPASDLRWSKQTDAGITHFRSGMSHAEDTLIPNLYRYIQPWEAEFLDSARVWSEYALKRKEANAQNRRLTLE
DLEDSWDRGIPRINTLFQKDRHTLAYDKGWRTRTEWKCYQLLKHNPFWWTSQRHDGKLWQLNNYRVDVIAALGGV
EGILEHTLFKGTYFPTWEGLFWEKASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLD
LTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDDQLEALQIETVQKETIHSPKVWNVTRPSLLTDS
KDVLDGTTSNKYWLDVQLRWGDFDSHDIERYTRAKFLDYSTDSMSIYPSPTGVLIGIDLAYNLHAAYGNWTPGMK
PLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLNSQNYSELFSNQIIWFVDDTQVYRVTIHKTFEGNL
TTKPINGAIFIFNPRTGQAFIKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQVIVTRKGMLDPLE
VHLLDFPNIVIKGSELQLPFQACMKLEKFGDLILRASQPQMVLANLYDDWLKSISSYTAFSRLILLLRSVHVNNE
KAKIILRPNKNTITAPHHVWPTLGDEEWMRVEIALRDLILSDYAKRNAVNTASLTSSEIRDIILGMEISAPSIQR
QQMSEIEKSTEAAGQVTATQIETTNKLGDRAIITTTTAYEQQVFSSKTDWRIRAISATNIPLRLQHVYVTNDDVK
DDLPTFVLAKNIMKSFVCAADLRSPCAAYLYGTEAADNSRVIEVKAVVVVPQRASVRTVEIANDLPTSPLLDGMK
IVGIICTQAQETQSLTPSDAVLYARLMAQHPEIDGSSIMLTVSFTPGSLSLSAYALTPKGFEWGRTADPNTPAGY
NPASMVDRAQLLLSDRILGSTFAPEGDLWNYSSGLGAQFDVKNPYTITLVGAPIPFWAPEHRPAHFAAFVASAED
TIEADIDDNFA
KEGG Ontology ID : K12856
Disordered region length :
Disordered region residues : N/A
Disordered binding region residues length :
Disordered binding region residues : N/A
Domain information :
Database Database ID Domain description Range covered Gene ontology
CDD cd08056 MPN_PRP8 2069-2319 N/A
FunFam 3.30.420.230-FF-000001 Pre-mRNA-processing-splicing factor 8 1763-1923 N/A
FunFam 1.20.80.40-FF-000001 Pre-mRNA-processing-splicing factor 8 1924-2022 N/A
Pfam PF08082 PRO8NT (NUC069), PrP8 N-terminal domain 63-214 GO:0000398
Pfam PF08083 PROCN (NUC071) domain 409-814 GO:0000398
Pfam PF10598 RNA recognition motif of the spliceosomal PrP8 999-1089 GO:0003723
Pfam PF10596 U6-snRNA interacting domain of PrP8 1462-1618 GO:0017070
Gene3D 3.30.43.40 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 1197-1306 N/A
Structure information :
Structure ID Modelling platform Score (NDOPE/pLDDT) Molprobity score Current description Structure file
LAN_03_080,3.40.140.10-FF-000002,2060-2336 ColabFold 90.24 2.048 Pre-mRNA-processing-splicing factor 8 LAN_03_080,3.40.140.10-FF-000002,2060-2336
LAN_03_080,PF08082,63-214 ColabFold 88.69 2.203 PRO8NT (NUC069), PrP8 N-terminal domain LAN_03_080,PF08082,63-214
LAN_03_080,PF08083,409-814 ColabFold 87.91 2.277 PROCN (NUC071) domain LAN_03_080,PF08083,409-814
LAN_03_080,PF10596,1462-1618 ColabFold 79.74 2.595 U6-snRNA interacting domain of PrP8 LAN_03_080,PF10596,1462-1618
LAN_03_080,PF10597,1223-1362 FunMod -0.70416 2.175 U5-snRNA binding site 2 of PrP8 LAN_03_080,PF10597,1223-1362
LAN_03_080,PF10598,999-1089 ColabFold 85.4 2.521 RNA recognition motif of the spliceosomal PrP8 LAN_03_080,PF10598,999-1089
LAN_03_080,PF12134,1762-1991 FunMod -1.00189 2.706 PRP8 domain IV core LAN_03_080,PF12134,1762-1991
Ligand binding site information :
Structure ID Residues
LAN_03_080,PF08083,409-814 155,158,159,162,163,166,183,187,235,239,242,243,246,94,98
Protein-protein interaction site information :
Structure ID Protein-protein interaction site residues
LAN_03_080,3.40.140.10-FF-000002,2060-2336 10,14,16,17,255,256,257,258,259,260,261,263,264,266,267,268,269,270,271,272,273,274,275,276,277
LAN_03_080,PF08082,63-214 49,50,51,52,78,80,81,82,83,84,87,88,89,91,92,94,95,98,105,106,107,108,109,110,111,112,118,119,121,125,134,146,149,151,152
LAN_03_080,PF08083,409-814 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,23,24,26,27,29
LAN_03_080,PF10596,1462-1618 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,19,21,22,23,24,25,26,28,29,30,32
LAN_03_080,PF10598,999-1089 1226,1227,1241,1244,1281,1282,1284,1285,1286,1287,1288,1289,1291,1292,1301
LAN_03_080,PF10597,1223-1362 15,50,53,54,56,57,58,59,61,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,79,80,81,82,83,84,85,86,87,88,89,90,91
LAN_03_080,PF12134,1762-1991 1789,1790,1791,1792,1793,1794,1795,1796,1797,1798,1799,1800,1801,1802,1803,1804,1805,1806,1826,1830,1909,1940,1943,1946,1947,1948,1983,1984,1986,1987,1988,1989,1990

Footer